Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00155 ATGAATTCCCACAAATTTACCGCCAAGACCAGTGAGATGATTGTTGGGGCTCAAGTACTAGCTCTGACTGCTGGTCATGCCCAATTTACTCCCCTTCATCTAGCAGTTTGTTTGATTTCTGATCCTAGTGGAATCTTCAGGCAGGTAGTTGCCGACTCCGGCGAAGAGAACGCTTCAAAAGGGGTGGAGATAGTGTTGAATCGGGCGTTGAAGAAATTCCCATCTCAAACCCCTCCTCCAGAAGATATTCGGGCGAGTTCTACGCTCATCAAAGCGATTACACGGGCTCAATCGGCTCAAAATACGCGTGGGAACACCCATTTGGCTGTAGATCAGTTGATTTTAAGCCTTCTGGAGGATAATCAAATCGGAGAGGTGTTGAATGAAGCAGGCGTTGCATCTGCAAAAGTGAAATCCGAGGTCGAGAAGCTTCGTGGAAAAGAAGAGAGGAGGAGAGTGGACAGTGCTTCTGGCGATTCGACATTTCAAGCTTTGAAGACTTACGGCGGAGATCTCGTCAAACAAGCCAGAAAGCACGACCCAGTCATCGGCCGAGATGAGGAGATTAGAAGGGTGGTGACGATCTTGTCGAGAAGAACTAAGAACAACCCAGTTCTCATCGGAGAGCCCGGCGTCGGAAAAACAGCAGTGGTTGAAGGATTAGCTCAGAGAATAGTGAAAAGAGACGTCCCAAGTAATCTCGCAGATGTCAGGCTCGTAGCGTTAGACATGGGAGCTTTAGTCGCAGGAACCAAATATAGGGGAGAGTTTGAGGAGCGGCTGAAAGCAGTTTTGAAAGAGGTAGAAGATTCAGACGGAAGAGTAATCTTGTTCATCGACGAGATTCACTTAGTCCTCGGCGCCGGCCGCACAGAGAACGTCGCCATGGACGCCGCAAACCTCTTAAAGCCAATGCTTGCCAGAGGCCAGCTCCGGTGCATCGGAGCAACCACCCTCGACGAATACCGGAAGTACGTCGAGAAAGACGCCGCATTTGAGCGACGATTTCAACAGGTATTCGTCGCTGAACCCAGCGTCCAAGATACAGTCAGTATTCTTCGAGGGTTGAAGGAGAGATACGAAGGTCATCATGGCGTGAGAATCCCAGACAGAGCTCTGATCGTTGCAGCTCAGCTCTCCGACAGATATATTACCGGTCGTCGTCTTCCTGACAAGGCGATAGACCTAGTTGACGAAGCCTGCGCAAACGTTAGAGTACAGCTTGATAGTGTTGAGTTTTTCTGTTTTCATTTCCGAGATCAAAACTGGGACTGTTGTAAAAATTTGTTTTTTTTTTTCCAGGTGAGGAAAGAGATAAATGATCTAAGAGATAAGCTTCAGCCTCTGTTGATGAAATATCAGAAGGAGAAAGAGAGGATCAATGAGATTCGAAGATTGAAACGGAGAAGGGAAGAGCTTCAGATTGCGTTACAGGCGGCGGAAAGAAGATACGATTTAGCCAGAGCGGCGGATCTGCGATACGGCGGAATTCAGGAGGTGGAAACCGCCATTGCACGAATCGAAGGTATCACCGGCGAGAATTTAATGCTGACGGGGAACGTCGGACCGGAACACATAGCTGAGGTGGTAGCGAGGTGGACTGGTATTCCGGTCACGCGGCTTGGTCAGAACGAGAAAGAAAGGCTGATTGGGCTCGGCGAGAGGCTGCAGAGGAGAGTCGTCGGACAAGACCGAACCGTCGATGCAGTTGCAGAGGCGGTTTTGAGGTCGAGAGCGGGTCTGGGAAGGCCCCAACAGCCGACTGGCTCCTTCCTCTTTCTGGGTCCGACCGGCGTCGGAAAAACTGAGCTTGCAAAGGCTTTGGCGGAGCAGCTCTTCGACAATGAAAATCTTCTGGTGCGAATGGACATGTCGGAGTATATGGAGCAACACTCTGTTTCTCGATTGATCGGAGCACCTCCTGGGTATGTCGGACACGAGGACGGCGGCCAACTGACGGAGGCAGTTAGGAGGAGACCGTACAGTGTTGTGCTTTTCGATGAAGTGGTTTTTGGAATTTACCCTTCTATTTTCAATACACTTCTTCAAGTTTTAGATGACGGAAGACTGACAGACGGCCATGGCCGAAAGGTTGATTTCGGAAATACGGTAATAGTTATGACGTCAAATCTCGGCGCGGATCATCTTCTATCTGGTTTACTGGGCCAGACCACCATGAAAGTAGCTCAAGAAATGGTTTACGGTGCTAGACCCATCAGGAGGTGGCTCGAGAAACACATCATAACGGAGTTATCAAAAATGCTGATCCGAGAAGAAATCAATGAGAATTCGACCGTGTACGTTGATGCAGGGCAAAACGGGAGCAAATTGAGGTTCAGAGTAGAGAAGACGGAGGATTTGTGGTTTTGA 2370 49.37 MNSHKFTAKTSEMIVGAQVLALTAGHAQFTPLHLAVCLISDPSGIFRQVVADSGEENASKGVEIVLNRALKKFPSQTPPPEDIRASSTLIKAITRAQSAQNTRGNTHLAVDQLILSLLEDNQIGEVLNEAGVASAKVKSEVEKLRGKEERRRVDSASGDSTFQALKTYGGDLVKQARKHDPVIGRDEEIRRVVTILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVKRDVPSNLADVRLVALDMGALVAGTKYRGEFEERLKAVLKEVEDSDGRVILFIDEIHLVLGAGRTENVAMDAANLLKPMLARGQLRCIGATTLDEYRKYVEKDAAFERRFQQVFVAEPSVQDTVSILRGLKERYEGHHGVRIPDRALIVAAQLSDRYITGRRLPDKAIDLVDEACANVRVQLDSVEFFCFHFRDQNWDCCKNLFFFFQVRKEINDLRDKLQPLLMKYQKEKERINEIRRLKRRREELQIALQAAERRYDLARAADLRYGGIQEVETAIARIEGITGENLMLTGNVGPEHIAEVVARWTGIPVTRLGQNEKERLIGLGERLQRRVVGQDRTVDAVAEAVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDNENLLVRMDMSEYMEQHSVSRLIGAPPGYVGHEDGGQLTEAVRRRPYSVVLFDEVVFGIYPSIFNTLLQVLDDGRLTDGHGRKVDFGNTVIVMTSNLGADHLLSGLLGQTTMKVAQEMVYGARPIRRWLEKHIITELSKMLIREEINENSTVYVDAGQNGSKLRFRVEKTEDLWF 789
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2018170 2031228 - Bma022774.1 Bma06g00155 83657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00155 789 Gene3D - 432 510 - -
Bma06g00155 789 ProSiteProfiles Clp repeat (R) domain profile. 3 147 IPR004176 -
Bma06g00155 789 Coils Coil 456 490 - -
Bma06g00155 789 Pfam AAA lid domain 345 410 IPR041546 -
Bma06g00155 789 Pfam Clp amino terminal domain, pathogenicity island component 17 54 IPR004176 -
Bma06g00155 789 Pfam Clp amino terminal domain, pathogenicity island component 96 146 IPR004176 -
Bma06g00155 789 PANTHER CHAPERONE PROTEIN CLPB3, CHLOROPLASTIC 726 784 - -
Bma06g00155 789 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 535 IPR027417 -
Bma06g00155 789 CDD AAA 561 721 - -
Bma06g00155 789 Gene3D - 3 148 IPR036628 -
Bma06g00155 789 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 591 609 IPR001270 GO:0005524
Bma06g00155 789 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 636 654 IPR001270 GO:0005524
Bma06g00155 789 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 666 684 IPR001270 GO:0005524
Bma06g00155 789 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 699 713 IPR001270 GO:0005524
Bma06g00155 789 ProSitePatterns Chaperonins clpA/B signature 1. 297 309 IPR018368 GO:0005524
Bma06g00155 789 ProSitePatterns Chaperonins clpA/B signature 2. 621 639 IPR028299 -
Bma06g00155 789 SMART AAA_5 200 346 IPR003593 -
Bma06g00155 789 SMART AAA_5 587 753 IPR003593 -
Bma06g00155 789 Pfam C-terminal, D2-small domain, of ClpB protein 728 768 IPR019489 -
Bma06g00155 789 SUPERFAMILY Double Clp-N motif 5 141 IPR036628 -
Bma06g00155 789 PANTHER ATP-DEPENDENT CLP PROTEASE 726 784 - -
Bma06g00155 789 PANTHER ATP-DEPENDENT CLP PROTEASE 3 719 - -
Bma06g00155 789 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 536 768 IPR027417 -
Bma06g00155 789 PANTHER CHAPERONE PROTEIN CLPB3, CHLOROPLASTIC 3 719 - -
Bma06g00155 789 Gene3D - 346 413 IPR027417 -
Bma06g00155 789 Pfam AAA domain (Cdc48 subfamily) 587 729 IPR003959 GO:0005524|GO:0016887
Bma06g00155 789 Gene3D - 518 767 IPR027417 -
Bma06g00155 789 Pfam ATPase family associated with various cellular activities (AAA) 205 322 IPR003959 GO:0005524|GO:0016887
Bma06g00155 789 CDD AAA 183 344 - -
Bma06g00155 789 Gene3D - 151 345 IPR027417 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma03g00847 Bma06g00155 CCT
Bma06g00155 Bma08g00280 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00155 Bma-Chr6:2018170 Bma08g00280 Bma-Chr8:3794538 0 dispersed
Bma03g00847 Bma-Chr3:8104314 Bma06g00155 Bma-Chr6:2018170 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00155 K03695 - csv:101221981 1085.48