Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00280 ATGGCTAGAGTTCTTGTACAGTCAACAAATATACCTGGGCTAGTCTCTGGGCAGAAGGATGGCCTGTTGAGGGGACCTGGAAATACAAAATCGGCTGTCAGAATGATGAGTAGTCTACAGTCGCCTGGATTGGGGATGAGAGGTTTCTCAGGATTAAGGGGTTTTAATGCTTTAGATACCATGGTCAGGCCTGGGCAAGATTTTCATTCCAAAATAGCAATTTCTCTTTCTTCTCGAAGACAAAGAAGGGCCACCAGATGTGTTCCAAAAGCCATGTTTGAGCGATTCACTGAAAAAGCAATTAAAGTTATTATGCTTGCCCAAGAGGAAGCAAGACGACTTGGTCATAATTTTGTCGGTACAGAACAGATCTTATTGGGTCTTATTGGTGAAGGTACTGGTATTGCTGCAAAGGTTCTTAAATCAATGGGAATTAATCTTAAAGATGCACGGGTGGAAGTGGAGAAAATAATTGGACGAGGTAGTGGATTTGTAGCTGTGGAGATTCCGTTCACTCCCCGTGCAAAACGTGTATTGGAGCTCTCGTTGGAGGAGGCTCGCCAACTTGGTCATAATTATATCGGATCTGAGCATTTGCTTCTTGGATTACTTCGTGAGGGTGAGGGTGTTGCAGCCCGTGTTCTTGAAAATTTAGGATATCAAGTTATTCGTATGGTTGGTGAGAGTACGGAGGCTGTTGGTGCCGGTGTTGGAGGAGGAACTAGTGGGAATAAAATGCCAACATTGGAGGAGTATGGAACAAATTTGACAAAGATGGCTGAGGAGGGAAAACTGGACCCTGTTGTTGGAAGGCAACAGCAGATTGAACGTGTAACCCAAATTTTGGGTAGGAGGACAAAAAATAATCCATGTTTGATAGGTGAACCTGGGGTCGGGAAAACAGCAATTGCTGAAGGCCTTGCTCAAAGGATCGCAAATGGGGATGTTCCAGAAACAATAGAAGGAAAGAAGGTCATTACCTTGGACATGGGGCTTCTTGTAGCTGGCACAAAATACCGAGGAGAGTTTGAGGAAAGGTTAAAAAAATTAATGGAAGAGATCAAGCAAAGTGATGAAATAATACTCTTTATAGATGAAGTCCACACATTAATTGGGGCAGGAGCTGCTGAAGGAGCTATTGATGCTGCGAACATATTAAAACCTGCTCTTGCTAGAGGTGAACTGCAGTGTATTGGAGCCACGACACTCGATGAATATAGAAAACACATCGAGAAAGACCCAGCTTTAGAAAGACGATTCCAGCCAGTCAAAGTACCTGAACCAACTGTGGATGAAACCATACAGATTCTGAAAGGGCTTAGGGAGCGCTATGAGATCCACCACAAGCTTCGCTACACGGATGAAGCTCTAGTAGCTGCTGCACATTTGTCGTATCAATATATCAGTGATCGATTTCTGCCTGATAAAGCAATTGACTTGATTGACGAAGCTGGTTCTCGTGTTCGGCTTCGCCATGCACAGGCATGTCATCTTCATCTTAAGCTTGCTCTATCTTTCTTTTATTTTTTTTTCCAGCTACCTGAGGAAGCCAGAGAGCTTGAGAAAGAGCTCAGGCAGATCACCAAAGAAAAGAACGAGGCTGTTCGAAGTCAAGACTTTGAGAAGGCTGGAGAATTGCGTGATAGAGAAATGGATCTGAAGGCACAAATCTCCACTCTTGTGGATAAGGGCAAGGAGATGAGTAAAGCAGAGAGCGAAGCAGCTAATGTAGGCCCTGTTGTGACTGAAGTCGACATTCAGCACATTGTGTCTTCATGGACTGGTATACCGGTCGAAAAAGTGTCAACTGATGAGTCTGATCGACTTCTGAAAATGGAAGAGACCCTTCACAAGAGGGTTATCGGACAGGATGAAGCTGTAAAAGCAATTAGCCGTGCTATTCGCCGAGCTCGTGTTGGACTGAAGAACCCCAATCGTCCAATCGCCAGCTTCATCTTTTCTGGGCCAACTGGTGTCGGGAAATCTGAACTGGCCAAGGCCTTGGCTGCTTACTACTTTGGGTCTGAAGAAGCAATGATTCGGCTTGACATGAGTGAGTTTATGGAAAGGCACACCGTCTCTAAGCTCATTGGATCGCCCCCAGGATATGTAGGCTACACCGAGGGTGGTCAACTGACAGAGGCTGTCAGACGCCGCCCATACACAGTGGTCCTCTTTGATGAGATCGAGAAGGCCCATCCGGACGTCTTCAACATGATGCTCCAAATTCTCGAGGACGGAAGATTGACCGACAGCAAGGGAAGAACTGTCGACTTTAAGAACACTCTTCTCATAATGACGTCAAACGTCGGAAGTAGCGTAATCGAGAAAGGAGGCCGGAGAATAGGATTTGATCTAGATTACGACGAGAAGGACAGCAGCTACAACCGAATCAAGAGCTTAGTGACTGAGGAACTGAAACAATACTTCCGACCAGAGTTTTTGAACAGATTGGACGAGATGATCGTTTTCCGGCAGTTGACGAAGTTGGAGGTGAAAGAGATAGCCGATATAATGCTAAAGGAGGTTTTTGACAGGCTGAAGAGCAAAGAAATCGAACTTCAAGTGACCGAGAGGTTTAGAGATAGAGTGGTGGACGAAGGCTATAACCCGAGCTATGGGGCCCGGCCATTGAGAAGGGCTATAATGAGACTATTGGAGGACAGCATGGCGGAGAAGATGCTGGCCCGGGAGATCAAGGAAGGCGACTCGGTCATTGTGGACGTCGACTCCGACGGCAACGTCACAGTTCTCAACGGCGGCAGTGGGGCTCAGGAATCGTTGGCGGAGTCAATTCCTGTCTAA 2805 46.2 MARVLVQSTNIPGLVSGQKDGLLRGPGNTKSAVRMMSSLQSPGLGMRGFSGLRGFNALDTMVRPGQDFHSKIAISLSSRRQRRATRCVPKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGYQVIRMVGESTEAVGAGVGGGTSGNKMPTLEEYGTNLTKMAEEGKLDPVVGRQQQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDEALVAAAHLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQACHLHLKLALSFFYFFFQLPEEARELEKELRQITKEKNEAVRSQDFEKAGELRDREMDLKAQISTLVDKGKEMSKAESEAANVGPVVTEVDIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKSKEIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGNVTVLNGGSGAQESLAESIPV 934
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3794538 3799504 - Bma027301.1 Bma08g00280 87107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00280 934 Gene3D - 827 925 - -
Bma08g00280 934 Gene3D UVR domain 514 570 - -
Bma08g00280 934 CDD AAA 621 769 - -
Bma08g00280 934 ProSiteProfiles Clp repeat (R) domain profile. 93 235 IPR004176 -
Bma08g00280 934 ProSitePatterns Chaperonins clpA/B signature 2. 681 699 IPR028299 -
Bma08g00280 934 ProSitePatterns Chaperonins clpA/B signature 1. 381 393 IPR018368 GO:0005524
Bma08g00280 934 SUPERFAMILY Double Clp-N motif 94 222 IPR036628 -
Bma08g00280 934 Gene3D - 240 428 IPR027417 -
Bma08g00280 934 Coils Coil 340 360 - -
Bma08g00280 934 Pfam Clp amino terminal domain, pathogenicity island component 183 219 IPR004176 -
Bma08g00280 934 Pfam Clp amino terminal domain, pathogenicity island component 107 159 IPR004176 -
Bma08g00280 934 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 246 593 IPR027417 -
Bma08g00280 934 Pfam C-terminal, D2-small domain, of ClpB protein 827 907 IPR019489 -
Bma08g00280 934 Pfam AAA lid domain 429 548 IPR041546 -
Bma08g00280 934 CDD AAA 269 421 - -
Bma08g00280 934 PANTHER ATP-DEPENDENT CLP PROTEASE 78 933 - -
Bma08g00280 934 Pfam ATPase family associated with various cellular activities (AAA) 291 407 IPR003959 GO:0005524|GO:0016887
Bma08g00280 934 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 596 913 IPR027417 -
Bma08g00280 934 Gene3D - 92 234 IPR036628 -
Bma08g00280 934 SMART AAA_5 286 426 IPR003593 -
Bma08g00280 934 SMART AAA_5 647 828 IPR003593 -
Bma08g00280 934 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 651 669 IPR001270 GO:0005524
Bma08g00280 934 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 725 743 IPR001270 GO:0005524
Bma08g00280 934 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 758 772 IPR001270 GO:0005524
Bma08g00280 934 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 696 714 IPR001270 GO:0005524
Bma08g00280 934 Coils Coil 513 537 - -
Bma08g00280 934 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPA HOMOLOG CD4B, CHLOROPLASTIC 78 933 - -
Bma08g00280 934 Pfam AAA domain (Cdc48 subfamily) 646 820 IPR003959 GO:0005524|GO:0016887
Bma08g00280 934 Gene3D - 429 505 - -
Bma08g00280 934 ProSiteProfiles UVR domain profile. 521 556 IPR001943 GO:0005515
Bma08g00280 934 Gene3D - 578 825 IPR027417 -
Bma08g00280 934 SMART ClpB_D2_small_2 827 917 IPR019489 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma06g00155 Bma08g00280 CCT
Bma03g00847 Bma08g00280 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01266 Bma-Chr1:17142392 Bma08g00280 Bma-Chr8:3794538 0 dispersed
Bma06g00155 Bma-Chr6:2018170 Bma08g00280 Bma-Chr8:3794538 0 dispersed
Bma08g00280 Bma-Chr8:3794538 Bma10g01160 Bma-Chr10:40061002 1.60E-16 dispersed
Bma08g00280 Bma-Chr8:3794538 Bma03g00847 Bma-Chr3:8104314 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00280 K03696 - mnt:21388672 1613.2