Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00472 ACCGTCGGTCGTCGGTCGGTCGGTCTTCATTTTCACGACATGTCGTCTCTACATTTTCTCTCTCTTCTCTCTCTCCTCATCGCCTTTCTCACCGGAATCAAATCCGACGACGAACGTCAAATCCTAACCAAACTCATCTCCTCTCTCCACAACACACACGCCGCCGTCTTCCAAAATTGGGGACTCCAAAACCCCAAATGCAATTTCACCGGAATCGCCTGCAATTCACACGGGTTCGTCAACGAAATTAACCTCTCCAAATGGGGTTTAACCGGCGTTCTTCCTTTTGATTCCGTTTGCCAGTTACCGGCGTTGGAGAAGCTGATTCTTCGCGCCAATTCCCTGCACGGTGAAGTGACAGAGAGTTTAAACAATTGTGTAAAACTGAAGCATTTGGATCTCAGCAGCAATGGCTTCTCCGGCTCTTTCCCGGACATACATTCCTTGCCGGAATTGGAGTATCTGTATTTGAATTCAAGTGGGTTTTCCGGTAAGTTTCCATGGAAATCCGTCGGGAATTTGAGCGGTTTAATTGAGCTGAGCGTCGGAGATAACCCTTTTGAAAACGCTACTTTTCCGGTGGAGGTCACCAATTTGAAGAGGCTTAATTTGCTGTATTTGTCGAATTGTAGCTTAACAGGGGAAATTCCAAGATCTATTGGTAATCTCACGGAGCTTCTTAGTTTTGAATTTTCCGACAATTTTATAACAGGGGATATTCCGCCGGAGATTGGTCGCCTGCAGAAGCTCTGGCAGTTGGTGTTCTATAATAATCAATTAACGGGGACACTTCCGGTGGGATTAAGAAACCTTACCGGCCTTAAGAATTTCGATGCTTCGTTGAATTATATCCATGGGGATCTGTCGGAGTTGAGGTTTTTGACGAATTTGGTTTCTCTGCAAATGTTTGATAATCAATTTTCCGGCCATGTTCCGGTGGAGTTTGGGGAGTTTAAGTCGCTGGTTAATCTGTCCCTTTATCGGAATAGGCTTACGGGGCCTCTGCCGCAATCCATTGGTTCTTGGGCGGCGTTTGATTTCATTGATTTGGTTGGTTCGATTACTTCTGATATTGGAAAGGCTGTGTGTCTCTCTGAATTTTACGTCGGAAATAATCGATTCTCAGGCCGATTGCCATTGGAGATTTCACAAGCGGAATCTCTTGCTTCGGTTGACTTGAGCAATAATCAGTTCTCTGATGAGCTTCCGATGACTATCGGTGACCTTAAGAATCTCGATAGCCTCGAATTGCAGGGGAATAAATTCTCTGGTTCGATTCCGGAGACGATTGGCTCGTGTAATTCCCTAAGTATCGTCAATTTGGCGGATAATTTCTTCTCTGGACAAATTCCTTCGTCTCTAGGTTTTCTTCCGGTTCTCAACTCTTTGAATCTCTCCAATAATGACTTATCAGGTGAAATCCCTTCGACATTTTCGCATTTGAAATTGAGTCTTCTCGATCTTTCCAACAATCAATTATCTGGTTCAATTCCTCTATCGCTATCGAACGGAGCTTACAACGAAAGTTTCACCGGAAATCCTGGCCTCTGTAGCGAGACCGATGGCTTTTTACGGCGATGTTCAAAGAGTTCTGGCACGTCCAAGGACGTTCGAATACTCGTCATTGGTATCCTCGTCGGATTAATTCTTCTCGGTGTAACACTATGGTGCTTCATAAAATTGAGAAAGAGCGACAAATATCGAGATCGGTCGCTTGAAAAGGAATCGTGGGACCTAAAATCATTCCACGTAATGACATTCACAGAGGACGAGATACTCGATTCCATTAAGGATGAGAATTTAATCGGAAAAGGAGGTTCTGGCAACGTCTACAAAGTGACGGTCGGAAACGGGAAAGAGTTAGCTGTGAAGCACATTTGGAACACTGATCCATATGAGAGGATGAACAACAACAATAACCGAAGCTCCTCTCCAATTCTACCGAAACAGAGAGCAAAGTCGTTGGAATTCAACTCGGAGTATGGATACAGTTACAAAGTGGACGAGAAGAGCGACGTGTACAGCTTCGGAGTGGTATTGATGGAGTTAGTGAGCGGGAAAAGAGCGATCGAGGCGGAGTTCGGAGAGAACAAGGAGATCGTAGAGTGGGTATCAAACAATTTGAAGAGCAAAGAAAGTGTATTAAAGTTGGTGGATTCAAGAATTGGCGATGCATATAAAGAGGAAGCCATAAAGGTATTAAGAATAGGAATATTGTGCACAGCCAGGGTTCCTTCCATGAGACCCACCATGAGGAGTGTGGTTCAAATGCTTGAAGAAGCCCACCCCTGTCGCCTGCTTGGGATACTCATTGCCAAAGATATCGACAACATTGATATCTAA 2343 44.64 TVGRRSVGLHFHDMSSLHFLSLLSLLIAFLTGIKSDDERQILTKLISSLHNTHAAVFQNWGLQNPKCNFTGIACNSHGFVNEINLSKWGLTGVLPFDSVCQLPALEKLILRANSLHGEVTESLNNCVKLKHLDLSSNGFSGSFPDIHSLPELEYLYLNSSGFSGKFPWKSVGNLSGLIELSVGDNPFENATFPVEVTNLKRLNLLYLSNCSLTGEIPRSIGNLTELLSFEFSDNFITGDIPPEIGRLQKLWQLVFYNNQLTGTLPVGLRNLTGLKNFDASLNYIHGDLSELRFLTNLVSLQMFDNQFSGHVPVEFGEFKSLVNLSLYRNRLTGPLPQSIGSWAAFDFIDLVGSITSDIGKAVCLSEFYVGNNRFSGRLPLEISQAESLASVDLSNNQFSDELPMTIGDLKNLDSLELQGNKFSGSIPETIGSCNSLSIVNLADNFFSGQIPSSLGFLPVLNSLNLSNNDLSGEIPSTFSHLKLSLLDLSNNQLSGSIPLSLSNGAYNESFTGNPGLCSETDGFLRRCSKSSGTSKDVRILVIGILVGLILLGVTLWCFIKLRKSDKYRDRSLEKESWDLKSFHVMTFTEDEILDSIKDENLIGKGGSGNVYKVTVGNGKELAVKHIWNTDPYERMNNNNNRSSSPILPKQRAKSLEFNSEYGYSYKVDEKSDVYSFGVVLMELVSGKRAIEAEFGENKEIVEWVSNNLKSKESVLKLVDSRIGDAYKEEAIKVLRIGILCTARVPSMRPTMRSVVQMLEEAHPCRLLGILIAKDIDNIDI 780
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2787761 2790903 + Cp4.1LG06g03970.1 Cpe06g00472 471252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00472 780 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 19 350 - -
Cpe06g00472 780 Gene3D Ribonuclease Inhibitor 291 349 IPR032675 -
Cpe06g00472 780 Gene3D Ribonuclease Inhibitor 36 191 IPR032675 -
Cpe06g00472 780 Gene3D Ribonuclease Inhibitor 192 290 IPR032675 -
Cpe06g00472 780 Gene3D Ribonuclease Inhibitor 350 449 IPR032675 -
Cpe06g00472 780 PANTHER RECEPTOR-LIKE PROTEIN KINASE 7 350 639 - -
Cpe06g00472 780 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 659 769 - -
Cpe06g00472 780 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 350 639 - -
Cpe06g00472 780 SUPERFAMILY L domain-like 294 502 - -
Cpe06g00472 780 SUPERFAMILY Protein kinase-like (PK-like) 587 630 IPR011009 -
Cpe06g00472 780 Gene3D Ribonuclease Inhibitor 450 518 IPR032675 -
Cpe06g00472 780 Gene3D Transferase(Phosphotransferase) domain 1 657 765 - -
Cpe06g00472 780 ProSitePatterns Protein kinases ATP-binding region signature. 602 624 IPR017441 GO:0005524
Cpe06g00472 780 Pfam Leucine Rich Repeat 198 223 IPR001611 GO:0005515
Cpe06g00472 780 Pfam Leucine Rich Repeat 128 145 IPR001611 GO:0005515
Cpe06g00472 780 Pfam Leucine Rich Repeat 460 481 IPR001611 GO:0005515
Cpe06g00472 780 SUPERFAMILY Protein kinase-like (PK-like) 661 759 IPR011009 -
Cpe06g00472 780 SUPERFAMILY L domain-like 42 349 - -
Cpe06g00472 780 Pfam Leucine rich repeat N-terminal domain 36 75 IPR013210 -
Cpe06g00472 780 PANTHER RECEPTOR-LIKE PROTEIN KINASE 7 659 769 - -
Cpe06g00472 780 PANTHER RECEPTOR-LIKE PROTEIN KINASE 7 19 350 - -
Cpe06g00472 780 ProSiteProfiles Leucine-rich repeat profile. 128 150 IPR001611 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe06g00472 Cpe11g00500 CCT
Cpe02g00496 Cpe06g00472 CCT
Cpe06g00472 Cpe07g00194 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02151 Cpe-Chr1:18099141 Cpe06g00472 Cpe-Chr6:2787761 2.74E-133 dispersed
Cpe06g00472 Cpe-Chr6:2787761 Cpe15g00410 Cpe-Chr15:5252990 0 dispersed
Cpe17g00387 Cpe-Chr17:2816028 Cpe06g00472 Cpe-Chr6:2787761 9.60E-49 dispersed
Cpe06g00472 Cpe-Chr6:2787761 Cpe06g00473 Cpe-Chr6:2792097 8.20E-06 tandem
Cpe10g00515 Cpe-Chr10:3024430 Cpe06g00472 Cpe-Chr6:2787761 4.05E-16 wgd
Cpe11g00500 Cpe-Chr11:2919597 Cpe06g00472 Cpe-Chr6:2787761 1.97E-13 wgd
Cpe02g00496 Cpe-Chr2:2888980 Cpe06g00472 Cpe-Chr6:2787761 8.13E-06 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62469 PF07714 PK_Tyr_Ser-Thr 3.60E-05 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00472 - - cpap:110807830 637.106