Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00194 ATGGCTTTTCACTCAGCTTTCTTCCTGCTTTTGTTCCTCACTTCCTCCATCTCTGCTTCTTCTCAAGCTTCTACTGCTACTTCTACTGCTCCCAATCAGTCCCAGTTCTTCCTTCTCATGCAAAACACTGCCTCAGGAAAGTTCCTCACTGATTGGGATCTTTCCAAAGGTAAATCCTTCTGCAACTTCACCGGAATCGACTGCAATGANCAAGAGGTAAATCCTTCTGCAACTTCACCGGAATCGACTGCAATGACCGAGGGACGTTTTCCTCCAGGAATCACTAATTGTTCTCTCCTTGAAGAGCTTGACATGAGCTTCATGAATCTCAATGGAACAATCCCGGATTTGTCGCAAATGAAACAACTACGTCTGCTCGACTTATCGTACAATTCCTTCACTGGCGACTTTCCCATGTCGGTTTTCGACCTTGTGAATCTTGAGGTGCTGAATTTCAATGAGAATTATAATCTCAACTTATGGAAGTTGCCTGAGAAGATCTCCAGAATGAAGAAGCTGAAATCCATGGTGTTGACAACGTGTATGTTAGACGGGGAAATCCCGAGATCGATCGGGAACATGACGTCTCTTGTCGATCTCGAACTCAGTGGGAACTTTCTCAAGGGAGAGATCCCAAAAGAAATTTCCTTACTGAAGAACTTGCAACAGCTTGAACTCTATTACAATGAACTCACAGGAAACATACCAGAGGAGTTCGGAAATCTAACGGAGCTCGTCGACGTCGACATGTCGGTGAACCTTTTAACAGGAGAGCTACCAGAATCCATTTGCAAACTCCCAAAGCTTAAAGTTCTACAGATTTACAACAATAGTCTAACAGGAGAGATCCCAAGTGTACTAGCTAACTCAACAACACTAACTATGCTATCACTTTATGACAACTTTCTTACAGGACAGATTCCACAAAAGTTGGGGAAGTACTCACCAATGGTCGTCGTCGACTTGTCGGAAAATCGCCTGTCGGGGCCATTGCCATTGGATATATGCAGAGGAGGGGAATTGCTATACTTTCTTGTCCTGCAAAACAGCCTTTCTGGAGAAATCCCAGCAAGTTTCGCCAAATGCGAGTCGATTTTGAGGTTTCGGGTTAGTTTCAATCAGTTGGTAGGAGAAATTCCTCAAGAACTTTTGGCTCTCCCCCATGTTTCAATCATTGATGTTGCTCATAATCATCTCACTGGTTCCATTTCAAGTTCTATCTCACAGGCAAGAAACTTATCAGAGTTGTTCTTGCAAAGAAACAGGATTTCTGGAGTTATCCCGCCGGAGATTTCAGGAGCAACCAATCTGGTGAAGCTTGATCTCAGCAATAATCTTCTCTCCGATTATGCAGATTCATCAACGGCGACAACCAAATGCGATGTGTACAGTTTTGGGGTGGTTTTAATGGAGCTGATTACAGGGAAGAACCCGATTGAAGCCGAATATGGAGATAACAAGAACATTGCACACTGGATTTCGAACAAAATCGACACAAACGAACAAATTCTTGAGATTCTCGACAAGAGATTAAAAGGGTTGTTCATAAATGAGATAATTAAAGCATTGGGTATCGCAATTCGCTGTACTAAGAACAATCCAGAGCTCCGACCCGCCATGGGAGAGGTGGTTGAGCTTCTGCAAGAGGTGGATCCTTGCAAATATGATCAAGCTTCAAAGATGTCAAAAAAGTAG 1695 43.3 MAFHSAFFLLLFLTSSISASSQASTATSTAPNQSQFFLLMQNTASGKFLTDWDLSKGKSFCNFTGIDCNXQEVNPSATSPESTAMTEGRFPPGITNCSLLEELDMSFMNLNGTIPDLSQMKQLRLLDLSYNSFTGDFPMSVFDLVNLEVLNFNENYNLNLWKLPEKISRMKKLKSMVLTTCMLDGEIPRSIGNMTSLVDLELSGNFLKGEIPKEISLLKNLQQLELYYNELTGNIPEEFGNLTELVDVDMSVNLLTGELPESICKLPKLKVLQIYNNSLTGEIPSVLANSTTLTMLSLYDNFLTGQIPQKLGKYSPMVVVDLSENRLSGPLPLDICRGGELLYFLVLQNSLSGEIPASFAKCESILRFRVSFNQLVGEIPQELLALPHVSIIDVAHNHLTGSISSSISQARNLSELFLQRNRISGVIPPEISGATNLVKLDLSNNLLSDYADSSTATTKCDVYSFGVVLMELITGKNPIEAEYGDNKNIAHWISNKIDTNEQILEILDKRLKGLFINEIIKALGIAIRCTKNNPELRPAMGEVVELLQEVDPCKYDQASKMSKK 564
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1225364 1228620 + Cp4.1LG07g02670.1 Cpe07g00194 472001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00194 564 Gene3D Transferase(Phosphotransferase) domain 1 451 564 - -
Cpe07g00194 564 SUPERFAMILY L domain-like 157 481 - -
Cpe07g00194 564 Gene3D Ribonuclease Inhibitor 301 448 IPR032675 -
Cpe07g00194 564 Pfam Protein tyrosine and serine/threonine kinase 453 547 IPR001245 GO:0004672|GO:0006468
Cpe07g00194 564 SUPERFAMILY Protein kinase-like (PK-like) 452 551 IPR011009 -
Cpe07g00194 564 Pfam Leucine rich repeat 387 447 IPR001611 GO:0005515
Cpe07g00194 564 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 449 563 - -
Cpe07g00194 564 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 86 448 - -
Cpe07g00194 564 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 9 71 - -
Cpe07g00194 564 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 86 448 - -
Cpe07g00194 564 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 9 71 - -
Cpe07g00194 564 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 449 563 - -
Cpe07g00194 564 Gene3D Ribonuclease Inhibitor 33 216 IPR032675 -
Cpe07g00194 564 Gene3D Ribonuclease Inhibitor 217 294 IPR032675 -
Cpe07g00194 564 SUPERFAMILY L domain-like 59 208 - -
Cpe07g00194 564 ProSiteProfiles Leucine-rich repeat profile. 436 457 IPR001611 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe07g00194 Cpe11g00500 CCT
Cpe02g00496 Cpe07g00194 CCT
Cpe06g00472 Cpe07g00194 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00194 Cpe-Chr7:1225364 Cpe01g02151 Cpe-Chr1:18099141 9.65E-83 dispersed
Cpe11g00500 Cpe-Chr11:2919597 Cpe07g00194 Cpe-Chr7:1225364 0 wgd
Cpe19g00710 Cpe-Chr19:5545685 Cpe07g00194 Cpe-Chr7:1225364 1.06E-08 wgd
Cpe06g00473 Cpe-Chr6:2792097 Cpe07g00194 Cpe-Chr7:1225364 2.08E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62493 PF07714 PK_Tyr_Ser-Thr 9.30E-06 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00194 - - csv:101220145 673.7