Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g171 Blo01g00909 . . . . . . . . Cmo18g00539 . Cma18g00561 . . . Cpe09g00678 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g172 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g173 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g174 . . . . . . . . . . . . Car04g01610 . Sed06g1836 . Cpe01g01385 Bhi07g01403 Tan04g0931 Cmetu05g1710 . . . . Cla05g02384 Cam05g2556 Cec05g2588 Cco05g2629 Clacu05g2557 Cmu05g2414 Cre05g2531 . . . . . . . . . . . . . . . . . . . . . . . . Cpe04g01421 . . . . . . . . . . . . . . . . . .
Vvi1g175 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g176 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g177 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bhi12g01461 . . . Hepe03g0389 . . . . . . . . . . . . .
Vvi1g178 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g179 Blo01g00433 . Bda01g02145 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe02g02334 . . . . . . . . Car15g01288 . . . . . . . . . . . . . . . . . . Chy09g00649 .
Vvi1g180 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 18 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
1 57388044 57390363 + Bda004477.1 Bda01g02145 2145
7 42148129 42153593 - XM_039036679.1 Bhi07g01403 1403
12 47324506 47325171 - XM_039019076.1 Bhi12g01461 1461
1 4866491 4868533 - BLOR00433 Blo01g00433 433
1 19682939 19687906 - BLOR00909 Blo01g00909 909
2 23917019 23919285 + Bpe010150.1 Bpe02g02334 2334
5 33332403 33333309 - CaPI482276_05g025560.1 Cam05g2556 2556
4 9310420 9312853 - Carg01790-RA Car04g01610 1610
15 10056241 10056600 + Carg20753-RA Car15g01288 1288
5 34437282 34438167 - CcPI632755_05g026290.1 Cco05g2629 2629
5 36772815 36773706 - CePI673135_05g025880.1 Cec05g2588 2588
9 8371187 8377165 - Chy9G163650.1 Chy09g00649 649
5 33539958 33540855 - ClG42_05g0255700.10 Clacu05g2557 2557
5 35389710 35390636 - ClCG05G023590.1 Cla05g02384 2384
18 3697417 3702573 - CmaCh18G005610.1 Cma18g00561 561
5 6799401 6800831 - PI0028574.1 Cmetu05g1710 1710
18 4100568 4106127 + CmoCh18G005390.1 Cmo18g00539 539
5 33277792 33278689 - CmPI595203_05g024140.1 Cmu05g2414 2414
1 8342384 8345210 + Cp4.1LG01g13270.1 Cpe01g01385 1385
4 11414688 11423253 + Cp4.1LG04g14210.1 Cpe04g01421 1421
9 5822944 5828420 - Cp4.1LG09g06790.1 Cpe09g00678 678
5 36628326 36629201 - CrPI670011_05g025310.1 Cre05g2531 2531
3 5610531 5611345 + Hsped.03g03890.1 Hepe03g0389 389
6 42784488 42789967 + Sed0026832.2 Sed06g1836 1836
4 8189971 8194425 - Tan0003071.1 Tan04g0931 931
1 1683504 1691145 + Vvi1g171 Vvi1g171 171
1 1692023 1696196 + Vvi1g172 Vvi1g172 172
1 1704999 1708666 + Vvi1g173 Vvi1g173 173
1 1709971 1715657 - Vvi1g174 Vvi1g174 174
1 1716349 1724237 + Vvi1g175 Vvi1g175 175
1 1727283 1732878 - Vvi1g176 Vvi1g176 176
1 1742012 1746059 + Vvi1g177 Vvi1g177 177
1 1746064 1747717 + Vvi1g178 Vvi1g178 178
1 1747951 1751082 + Vvi1g179 Vvi1g179 179
1 1751425 1755913 - Vvi1g180 Vvi1g180 180
       

DecoBrowse