Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1650 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag0951 . . . . . . Blo17g00247 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1651 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1652 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag0952 . . . . . . . . . . . . . Bma02g00297 . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1653 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1654 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1655 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1656 . . . . . . . . . . . . . . . Cpe06g01009 . . . . . . . . Cla08g00044 Cam08g0043 Cec08g0209 Cco08g0098 Clacu08g0060 Cmu08g0058 Cre08g0048 . . . . . . . Cme09g00028 . . . . . . . . Sed05g1778 . Cmo09g01306 . . . Car09g01148 . . Bhi06g00231 Tan10g2022 Cmetu09g1078 . . . . . . . . . . . Lsi08g00036 . . .
Vvi18g1657 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1658 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1659 . . . . . . . . . . . . . . . Cpe06g01008 . . . . . . . . Cla08g00049 Cam08g0049 Cec08g0201 Cco08g0104 Clacu08g0065 Cmu08g0062 Cre08g0053 . . . . . . . Cme09g00032 . . . . . . . . . . Cmo09g01305 . . . Car09g01147 . . Bhi06g00226 . . . . . . . . . . . . . Lsi08g00040 . . .
   
Previous Page 2231 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
6 5365627 5370888 + XM_039035242.1 Bhi06g00226 226
6 5494994 5499038 + XM_039033687.1 Bhi06g00231 231
17 2460872 2463240 - BLOR16068 Blo17g00247 247
2 3447076 3448567 - Bma014749.1 Bma02g00297 297
8 987696 990967 - CaPI482276_08g000430.1 Cam08g0043 43
8 1032840 1036145 - CaPI482276_08g000490.1 Cam08g0049 49
9 11972960 11979451 - Carg27640-RA Car09g01147 1147
9 11999902 12005668 + Carg27639-RA Car09g01148 1148
8 1623318 1626643 - CcPI632755_08g000980.1 Cco08g0098 98
8 1680178 1683361 - CcPI632755_08g001040.1 Cco08g0104 104
8 3764796 3768236 + CePI673135_08g002010.1 Cec08g0201 201
8 3825317 3828582 + CePI673135_08g002090.1 Cec08g0209 209
8 1388164 1391458 - ClG42_08g0006000.10 Clacu08g0060 60
8 1432424 1435786 - ClG42_08g0006500.10 Clacu08g0065 65
8 1213949 1225419 - ClCG08G000430.2 Cla08g00044 44
8 1269197 1273848 - ClCG08G000470.1 Cla08g00049 49
9 252709 255351 - MELO3C022207.2.1 Cme09g00028 28
9 268946 271029 - MELO3C022205.2.1 Cme09g00032 32
9 21617929 21620634 + PI0017919.1 Cmetu09g1078 1078
9 11579332 11582914 - CmoCh09G013050.1 Cmo09g01305 1305
9 11604259 11610164 + CmoCh09G013060.1 Cmo09g01306 1306
8 1306694 1309989 - CmPI595203_08g000580.1 Cmu08g0058 58
8 1350912 1354268 - CmPI595203_08g000620.1 Cmu08g0062 62
7 7406850 7408752 + Conep07aG0098000.1 Cone7ag0951 951
7 7416262 7418469 + Conep07aG0098100.1 Cone7ag0952 952
6 10224939 10231576 - Cp4.1LG06g10070.1 Cpe06g01008 1008
6 10249560 10266927 + Cp4.1LG06g10060.1 Cpe06g01009 1009
8 1201417 1204675 - CrPI670011_08g000480.1 Cre08g0048 48
8 1257843 1264339 - CrPI670011_08g000530.1 Cre08g0053 53
8 902806 907341 - Lsi08G000360.1 Lsi08g00036 36
8 938115 942772 - Lsi08G000400.1 Lsi08g00040 40
5 31420473 31423861 + Sed0014840.1 Sed05g1778 1778
10 64422108 64424115 + Tan0016401.1 Tan10g2022 2022
18 27186732 27197462 + Vvi18g1650 Vvi18g1650 1650
18 27197973 27199926 - Vvi18g1651 Vvi18g1651 1651
18 27200244 27219980 + Vvi18g1652 Vvi18g1652 1652
18 27219979 27221408 + Vvi18g1653 Vvi18g1653 1653
18 27221407 27221909 + Vvi18g1654 Vvi18g1654 1654
18 27223833 27224243 - Vvi18g1655 Vvi18g1655 1655
18 27237098 27243046 - Vvi18g1656 Vvi18g1656 1656
18 27243702 27249772 + Vvi18g1657 Vvi18g1657 1657
18 27252794 27252944 + Vvi18g1658 Vvi18g1658 1658
18 27268864 27284577 + Vvi18g1659 Vvi18g1659 1659
       

DecoBrowse