Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g954 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g955 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g956 . . . . Bpe09g00290 . . Bma13g00898 Cmo16g00505 . . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag0984 . . . . . Blo10g00686 . . . . . . . . . Cma04g00636 Cma16g00466 Car04g00595 Car16g00421 . Cpe01g00574 . . . . . . . Cla07g01010 Cam07g1087 Cec07g1159 Cco07g1137 Clacu07g1061 Cmu07g1052 Cre07g1428 . . Chy07g01045 .
Vvi19g957 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe03g00863 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g958 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g959 . . . . . . . . . . . . . . . . . . . . . . . . Cla11g01584 Cam11g1651 Cec11g1679 Cco11g1676 Clacu11g1808 Cmu11g1622 Cre11g2038 . . . . Lsi04g01862 . . Cme07g00769 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g00885 Cme01g01542
Vvi19g960 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g961 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g962 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g963 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 2341 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
10 21978939 21990992 + BLOR02476 Blo10g00686 686
13 38978531 38984378 + Bma009972.2 Bma13g00898 898
3 28419311 28422781 + Bpe012771.1 Bpe03g00863 863
9 2290169 2295170 - Bpe023960.1 Bpe09g00290 290
7 25342920 25348059 - CaPI482276_07g010870.1 Cam07g1087 1087
11 29219702 29226642 + CaPI482276_11g016510.1 Cam11g1651 1651
4 3393345 3398636 + Carg13110-RA Car04g00595 595
16 2627164 2632110 - Carg11388-RA Car16g00421 421
7 25075881 25081021 - CcPI632755_07g011370.1 Cco07g1137 1137
11 29598577 29605614 + CcPI632755_11g016760.1 Cco11g1676 1676
7 26975015 26980153 - CePI673135_07g011590.1 Cec07g1159 1159
11 31055613 31062633 + CePI673135_11g016790.1 Cec11g1679 1679
1 8036377 8057675 + Chy1G008850.1 Chy01g00885 885
7 15387417 15392421 - Chy7G138750.1 Chy07g01045 1045
7 25156527 25161661 - ClG42_07g0106100.10 Clacu07g1061 1061
11 29240449 29247471 + ClG42_11g0180800.10 Clacu11g1808 1808
7 26488452 26493969 - ClCG07G010630.1 Cla07g01010 1010
11 29541339 29549268 + ClCG11G016260.1 Cla11g01584 1584
4 3259184 3264734 + CmaCh04G006360.1 Cma04g00636 636
16 2343498 2354389 - CmaCh16G004660.1 Cma16g00466 466
1 20498859 20522308 + MELO3C012631.2.1 Cme01g01542 1542
7 7029760 7038060 - MELO3C010552.2.1 Cme07g00769 769
16 2428290 2433240 - CmoCh16G005050.1 Cmo16g00505 505
7 25401174 25406308 - CmPI595203_07g010520.1 Cmu07g1052 1052
11 28493685 28500707 + CmPI595203_11g016220.1 Cmu11g1622 1622
15 7877535 7882654 + Conep15aG0100500.1 Cone15ag0984 984
1 3323186 3328735 + Cp4.1LG01g00930.1 Cpe01g00574 574
7 29324069 29329205 - CrPI670011_07g014280.1 Cre07g1428 1428
11 32154129 32161110 + CrPI670011_11g020380.1 Cre11g2038 2038
4 25759528 25773133 + Lsi04G018620.1 Lsi04g01862 1862
19 18240228 18240658 - Vvi19g954 Vvi19g954 954
19 18279467 18280235 - Vvi19g955 Vvi19g955 955
19 18293839 18303006 + Vvi19g956 Vvi19g956 956
19 18332101 18339207 - Vvi19g957 Vvi19g957 957
19 18355035 18355749 + Vvi19g958 Vvi19g958 958
19 18431717 18445331 - Vvi19g959 Vvi19g959 959
19 18546031 18549457 - Vvi19g960 Vvi19g960 960
19 18550101 18552220 - Vvi19g961 Vvi19g961 961
19 18583208 18592268 - Vvi19g962 Vvi19g962 962
19 18593102 18595449 - Vvi19g963 Vvi19g963 963
       

DecoBrowse