Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g746 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g747 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g748 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla09g01672 . . . . . . . . . .
Vvi3g749 . . . . . . . . . . . . . . . . . Bhi05g01005 . . . Hepe02g0667 . . . . . . . . . . . . . Lsi10g00278 . . . . . . . . . . . . . . . . . . . . Bhi10g01657 . . . . . . . . . . . . . . . . .
Vvi3g750 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g751 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g752 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g753 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g754 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g755 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 313 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
5 35526015 35529068 - XM_039032715.1 Bhi05g01005 1005
10 41828318 41830291 - XM_039046857.1 Bhi10g01657 1657
9 33490479 33492452 - ClCG09G017040.1 Cla09g01672 1672
2 7182551 7184890 - Hsped.02g06670.1 Hepe02g0667 667
10 4455691 4460744 - Lsi10G002780.1 Lsi10g00278 278
3 8082177 8086790 - Vvi3g746 Vvi3g746 746
3 8120761 8124112 - Vvi3g747 Vvi3g747 747
3 8141262 8145242 - Vvi3g748 Vvi3g748 748
3 8185980 8188614 - Vvi3g749 Vvi3g749 749
3 8193837 8195519 - Vvi3g750 Vvi3g750 750
3 8195667 8197771 - Vvi3g751 Vvi3g751 751
3 8209416 8210614 - Vvi3g752 Vvi3g752 752
3 8212187 8213029 - Vvi3g753 Vvi3g753 753
3 8216600 8219583 + Vvi3g754 Vvi3g754 754
3 8220123 8227724 - Vvi3g755 Vvi3g755 755
       

DecoBrowse