Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g72 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g73 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g74 . . . . . . . . . Cmo16g00620 . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0825 . . . . Cme07g01599 . . . . . . . . . . . . Cma16g00569 . . . . . . . . . . . . . . . . . . . . . .
Vvi2g75 Blo02g01131 Blo03g00234 Bda06g00131 . . . . . . . . . . . . . . . . . . . . . Cla07g00724 Cam07g0779 Cec07g0842 Cco07g0817 Clacu07g0763 Cmu07g0770 Cre07g1122 . . . . . . . Cme07g01598 . . . . . . . Bma12g00057 . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00626 Chy07g01187 .
Vvi2g76 . . . . Bpe05g00671 . . . . Cmo16g00619 . . . . . . . . . . . . . . Cla07g00721 Cam07g0776 Cec07g0839 Cco07g0814 Clacu07g0761 Cmu07g0768 Cre07g1119 . . . . . . . Cme07g01597 . . . . . . . . . . . . Cma16g00568 . . . . . . . . . . . . . . . . . . . Csa04g00627 Chy07g01186 .
Vvi2g77 . Blo03g00235 . . . Bpe07g00084 . . . . . . . . . . . . . . . . . . Cla07g00713 Cam07g0769 Cec07g0837 Cco07g0811 Clacu07g0753 Cmu07g0762 Cre07g1116 . . . Cone9ag0826 . . . . . . . . . . . Bma12g00055 . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00628 Chy07g01185 .
Vvi2g78 . . . . . . . Bma14g00562 . Cmo16g00617 . . . . . Cpe14g00481 . . . . . . . . Cla07g00709 Cam07g0766 Cec07g0834 Cco07g0810 Clacu07g0749 Cmu07g0760 Cre07g1114 . . . . . . . . . . . . . Bpe11g00707 . . . . . . Cma16g00567 . . . . . . . . . . . . . . . . . . . Csa04g00629 Chy07g01184 .
Vvi2g79 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g80 Blo02g01132 Blo03g00236 . Bda08g00492 Bpe05g00672 . Bma07g01677 Bma14g00623 . . Cma02g01410 Cma15g01261 Car02g01182 Car15g01137 . . Cpe05g00369 . . . . . . . . . . . . . . Cone8ag0263 Cone12ag0268 . . . Csa05g00224 Chy09g01276 . . . Bda07g00468 . Bpe08g01512 Bpe11g00645 Bma05g00845 . . Cmo02g01440 Cmo15g01329 . . . . . Cpe13g00126 Bhi12g00168 . . Lac11g2030 Hepe06g1499 . Lcy12g1592 Cla01g00207 Cam01g0212 Cec01g0207 Cco01g0210 Clacu01g0207 Cmu01g0202 Cre09g2305 Lsi09g00195 . . Cme09g01820
Vvi2g81 . Blo03g00237 Bda06g00132 . . Bpe07g00083 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0826 . . . . . . . . . . . . Bma12g00054 . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 148 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
6 2017833 2024239 - Bda023328.1 Bda06g00131 131
6 2031794 2034108 - Bda023329.2 Bda06g00132 132
7 5968750 5971245 - Bda025569.1 Bda07g00468 468
8 5025873 5026959 - Bda024943.1 Bda08g00492 492
12 4929494 4934022 - XM_039019350.1 Bhi12g00168 168
2 42644316 42647044 - BLOR10861 Blo02g01131 1131
2 42672198 42673842 + BLOR10862 Blo02g01132 1132
3 5154183 5156686 - BLOR11415 Blo03g00234 234
3 5160484 5163141 - BLOR11416 Blo03g00235 235
3 5177985 5178800 + BLOR11417 Blo03g00236 236
3 5178788 5181101 - BLOR11418 Blo03g00237 237
5 46015705 46018781 + Bma021961.2 Bma05g00845 845
7 52328775 52330204 + Bma026974.1 Bma07g01677 1677
12 1099460 1100112 + Bma006925.1 Bma12g00054 54
12 1109001 1111730 + Bma030489 Bma12g00055 55
12 1123460 1126011 + Bma006927.2 Bma12g00057 57
14 6018461 6021024 - Bma010992.1 Bma14g00562 562
14 6721497 6723980 + Bma011065.1 Bma14g00623 623
5 20394859 20395569 - Bpe018084.1 Bpe05g00671 671
5 20401457 20403842 + Bpe018085.1 Bpe05g00672 672
7 611987 614443 + Bpe020896.1 Bpe07g00083 83
7 622519 628676 + Bpe020897.1 Bpe07g00084 84
8 15792648 15794643 + Bpe023623.1 Bpe08g01512 1512
11 4974992 4977470 - Bpe004002.2 Bpe11g00645 645
11 5457178 5459776 + Bpe004063.1 Bpe11g00707 707
1 2459805 2463587 - CaPI482276_01g002120.1 Cam01g0212 212
7 18605031 18608310 + CaPI482276_07g007660.1 Cam07g0766 766
7 18963580 18968927 + CaPI482276_07g007690.1 Cam07g0769 769
7 19015887 19018905 + CaPI482276_07g007760.1 Cam07g0776 776
7 19163351 19166126 - CaPI482276_07g007790.1 Cam07g0779 779
2 8054193 8058032 - Carg02566-RA Car02g01182 1182
15 8965159 8969945 + Carg21261-RA Car15g01137 1137
1 2056657 2060390 - CcPI632755_01g002100.1 Cco01g0210 210
7 18068150 18079148 + CcPI632755_07g008100.1 Cco07g0810 810
7 18399460 18404527 + CcPI632755_07g008110.1 Cco07g0811 811
7 18470619 18473592 + CcPI632755_07g008140.1 Cco07g0814 814
7 18633466 18637270 + CcPI632755_07g008170.1 Cco07g0817 817
1 2057608 2061369 - CePI673135_01g002070.1 Cec01g0207 207
7 19944797 19959459 + CePI673135_07g008340.1 Cec07g0834 834
7 20277209 20282343 + CePI673135_07g008370.1 Cec07g0837 837
7 20362245 20365233 + CePI673135_07g008390.1 Cec07g0839 839
7 20478183 20481816 + CePI673135_07g008420.1 Cec07g0842 842
7 16676681 16685560 + Chy7G140140.1 Chy07g01184 1184
7 16704459 16708829 + Chy7G140150.1 Chy07g01185 1185
7 16713602 16716628 + Chy7G140160.1 Chy07g01186 1186
7 16727132 16729877 + Chy7G140170.1 Chy07g01187 1187
9 14761034 14764444 + Chy9G169920.1 Chy09g01276 1276
1 2076837 2080636 - ClG42_01g0020700.10 Clacu01g0207 207
7 18231485 18236550 + ClG42_07g0074900.10 Clacu07g0749 749
7 18644497 18649761 + ClG42_07g0075300.10 Clacu07g0753 753
7 18715253 18718220 + ClG42_07g0076100.10 Clacu07g0761 761
7 18845183 18847957 + ClG42_07g0076300.10 Clacu07g0763 763
1 2099185 2103520 - ClCG01G002120.1 Cla01g00207 207
7 19218105 19221373 + ClCG07G007440.2 Cla07g00709 709
7 19684651 19688875 + ClCG07G007480.1 Cla07g00713 713
7 19755930 19758896 + ClCG07G007570.1 Cla07g00721 721
7 19887424 19890198 + ClCG07G007600.2 Cla07g00724 724
2 8148168 8152332 - CmaCh02G014100.1 Cma02g01410 1410
15 8010009 8014234 + CmaCh15G012610.1 Cma15g01261 1261
16 2919666 2922709 + CmaCh16G005670.1 Cma16g00567 567
16 2924699 2931090 + CmaCh16G005680.1 Cma16g00568 568
16 2931153 2934214 + CmaCh16G005690.1 Cma16g00569 569
7 21738063 21742955 + MELO3C016322.2.1 Cme07g01597 1597
7 21761468 21774661 + MELO3C016323.2.1 Cme07g01598 1598
7 21780532 21784835 + MELO3C016324.2.1 Cme07g01599 1599
9 22499198 22503481 + MELO3C005731.2.1 Cme09g01820 1820
2 8496151 8500426 - CmoCh02G014400.1 Cmo02g01440 1440
15 9115961 9122039 + CmoCh15G013290.1 Cmo15g01329 1329
16 3018587 3021454 + CmoCh16G006170.1 Cmo16g00617 617
16 3024313 3026498 + CmoCh16G006190.1 Cmo16g00619 619
16 3029204 3033606 + CmoCh16G006200.1 Cmo16g00620 620
1 2030002 2033792 - CmPI595203_01g002020.1 Cmu01g0202 202
7 18433779 18438765 + CmPI595203_07g007600.1 Cmu07g0760 760
7 18854822 18859046 + CmPI595203_07g007620.1 Cmu07g0762 762
7 18924519 18927477 + CmPI595203_07g007680.1 Cmu07g0768 768
7 19054485 19057259 + CmPI595203_07g007700.1 Cmu07g0770 770
6 4213906 4216509 - Conep06aG0084900.1 Cone6ag0825 825
6 4222404 4224269 - Conep06aG0085000.1 Cone6ag0826 826
8 1527672 1530534 - Conep08aG0027600.1 Cone8ag0263 263
9 4014052 4017700 + Conep09aG0084400.1 Cone9ag0826 826
12 1443428 1446602 - Conep12aG0027800.1 Cone12ag0268 268
5 2091835 2096626 + Cp4.1LG05g03020.1 Cpe05g00369 369
13 897503 902897 - Cp4.1LG13g01310.1 Cpe13g00126 126
14 3033071 3048468 + Cp4.1LG14g02390.1 Cpe14g00481 481
7 21843139 21846394 + CrPI670011_07g011140.1 Cre07g1114 1114
7 22196290 22202001 + CrPI670011_07g011160.1 Cre07g1116 1116
7 22249678 22252681 + CrPI670011_07g011190.1 Cre07g1119 1119
7 22410072 22412848 + CrPI670011_07g011220.1 Cre07g1122 1122
9 42255507 42259292 + CrPI670011_09g023050.1 Cre09g2305 2305
4 4157503 4161762 - CsaV3_4G006260.1 Csa04g00626 626
4 4166789 4170129 - CsaV3_4G006270.1 Csa04g00627 627
4 4174984 4180221 - CsaV3_4G006280.1 Csa04g00628 628
4 4197249 4202381 - CsaV3_4G006290.1 Csa04g00629 629
5 1362866 1367826 - CsaV3_5G002240.1 Csa05g00224 224
6 65610911 65615230 - Hsped.06g14990.1 Hepe06g1499 1499
11 35936096 35940266 - Lag0032668.1 Lac11g2030 2030
12 36085742 36090697 - Maker00029483 Lcy12g1592 1592
9 2066308 2070725 - Lsi09G001950.1 Lsi09g00195 195
2 785041 785798 + Vvi2g72 Vvi2g72 72
2 790196 790679 + Vvi2g73 Vvi2g73 73
2 798756 804686 - Vvi2g74 Vvi2g74 74
2 805238 806989 - Vvi2g75 Vvi2g75 75
2 807008 808096 - Vvi2g76 Vvi2g76 76
2 809082 813431 - Vvi2g77 Vvi2g77 77
2 814054 819061 - Vvi2g78 Vvi2g78 78
2 835066 838279 + Vvi2g79 Vvi2g79 79
2 838382 848898 + Vvi2g80 Vvi2g80 80
2 848927 850935 - Vvi2g81 Vvi2g81 81
       

DecoBrowse