Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g72 . . . . . . . . . . Cma01g01456 . Car09g00542 . . . . . . . . . . . . . . . . . . . . . . Lsi04g02307 . Chy04g00175 . . . . . . . . . . Cmo01g01508 . Cma09g00611 . . . . . Bhi09g02545 . . . . . . . . . . . . . . . . Cme04g00206
Vvi4g73 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g74 . . . . Bpe02g01538 . . . . . . . . . Sed11g0888 . . Bhi04g00513 Tan02g1637 Cmetu03g0451 . Hepe08g1391 . . . . . . . . . . . . Cone20ag0266 . . . . Blo17g00289 Blo18g00285 . Bda13g01605 . . . Bma02g00357 . . . . Cma12g00637 . . . . . . . . . . . . . . . . . . Lsi08g01580 Csa02g01839 Chy03g01645 .
Vvi4g75 . . . . . . . . . Cmo12g00577 . . . Car12g00586 . Cpe07g00558 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe14g00260 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g76 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g77 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g78 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g79 . . . . . . . . Cmo05g00440 . . Cma05g00423 . . . . . . . . . . . . . . . . . . . . . . Cone20ag0276 . . . . . . Bda01g00999 . . . . Bma02g00027 . . . . . . . Cpe11g00363 . . . . . . . . . . . . . . . . . . .
Vvi4g80 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag1281 . . . . . . . . Bda01g01331 . . . . . . . . . . . . . Cpe02g00269 . . . . . . . . . . . . . . . . . .
Vvi4g81 . . . . . . . . . . Cma01g01728 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo18g00278 Bda01g01332 . . . Bma01g00920 . . . . . . . . . Cpe02g00268 . . . . . . . . . . . . . . . . . .
   
Previous Page 356 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
1 43582058 43585437 - Bda003158.3 Bda01g00999 999
1 48956185 48978326 - Bda003568.1 Bda01g01331 1331
1 48971097 48972992 + Bda032944 Bda01g01332 1332
13 39586465 39588958 - Bda000476.1 Bda13g01605 1605
4 12790706 12794493 + XM_039028138.1 Bhi04g00513 513
9 69131094 69135393 + XM_039041521.1 Bhi09g02545 2545
17 3038980 3053835 - BLOR16110 Blo17g00289 289
18 2942897 2944801 - BLOR08766 Blo18g00278 278
18 2980947 2988366 - BLOR08773 Blo18g00285 285
1 8969258 8971145 - Bma030212 Bma01g00920 920
2 313407 316877 + Bma014483.2 Bma02g00027 27
2 5714826 5717119 - Bma030879 Bma02g00357 357
2 18487824 18489671 + Bpe025151 Bpe02g01538 1538
14 2709552 2711964 + Bpe006914.1 Bpe14g00260 260
9 3080351 3083356 + Carg03024-RA Car09g00542 542
12 3912484 3916880 + Carg23961-RA Car12g00586 586
3 18310382 18312455 + Chy3G066250.1 Chy03g01645 1645
4 1542431 1544926 - Chy4G068930.1 Chy04g00175 175
1 10227901 10231170 - CmaCh01G014560.1 Cma01g01456 1456
1 11712513 11714626 - CmaCh01G017280.1 Cma01g01728 1728
5 1908259 1911834 + CmaCh05G004230.1 Cma05g00423 423
9 2889430 2892531 + CmaCh09G006110.1 Cma09g00611 611
12 3388572 3392319 + CmaCh12G006370.1 Cma12g00637 637
4 1518847 1522477 - MELO3C003487.2.1 Cme04g00206 206
3 601775 605252 - PI0020269.1 Cmetu03g0451 451
1 11643414 11646824 - CmoCh01G015080.1 Cmo01g01508 1508
5 2056656 2058465 + CmoCh05G004400.1 Cmo05g00440 440
12 3568060 3571728 + CmoCh12G005770.1 Cmo12g00577 577
7 9478858 9481325 + Conep07aG0132000.1 Cone7ag1281 1281
20 1185782 1187887 + Conep20aG0027700.1 Cone20ag0266 266
20 1225314 1226922 - Conep20aG0028700.1 Cone20ag0276 276
2 1385303 1388526 + Cp4.1LG02g06140.1 Cpe02g00268 268
2 1392001 1395228 - Cp4.1LG02g05980.1 Cpe02g00269 269
7 3706555 3713841 + Cp4.1LG07g06290.1 Cpe07g00558 558
11 1999303 2004931 + Cp4.1LG11g03660.1 Cpe11g00363 363
2 17579964 17583298 - CsaV3_2G025590.1 Csa02g01839 1839
8 16367091 16371112 + Hsped.08g13910.1 Hepe08g1391 1391
4 30266100 30270313 + Lsi04G023070.1 Lsi04g02307 2307
8 23833728 23838201 + Lsi08G015800.1 Lsi08g01580 1580
11 21374822 21378718 - Sed0018621.1 Sed11g0888 888
2 76411641 76418449 - Tan0000450.3 Tan02g1637 1637
4 794662 810293 + Vvi4g72 Vvi4g72 72
4 814857 815244 + Vvi4g73 Vvi4g73 73
4 833251 838822 + Vvi4g74 Vvi4g74 74
4 841052 846927 + Vvi4g75 Vvi4g75 75
4 851696 855195 - Vvi4g76 Vvi4g76 76
4 855195 855690 - Vvi4g77 Vvi4g77 77
4 855694 856257 - Vvi4g78 Vvi4g78 78
4 859048 863968 + Vvi4g79 Vvi4g79 79
4 871393 877594 + Vvi4g80 Vvi4g80 80
4 880517 883852 - Vvi4g81 Vvi4g81 81
       

DecoBrowse