Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g571 . . . . . . . . . . . . . . . . Cpe01g01869 . . . . . . . . . . . . . . . . . Cone9ag0366 . . . . . . . . . . . . . Cmo04g02253 . Cma04g02156 . Car04g02091 . . . . . . . . . . Cla01g00672 Cam01g0704 Cec01g0698 Cco01g0725 Clacu01g0692 Cmu01g0667 Cre09g1840 . Csa05g01305 Chy09g00460 Cme09g01268
Vvi1g572 . . . . . . . . . . . . . . . . Cpe01g01871 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo04g02255 Cmo15g00908 Cma04g02158 Cma15g00874 Car04g02093 Car15g00822 . . Bhi12g00996 . . . . . Lcy10g1573 Cla01g00674 Cam01g0705 Cec01g0699 Cco01g0727 Clacu01g0693 Cmu01g0668 . Lsi09g00732 Csa05g01306 Chy09g00459 Cme09g01267
Vvi1g573 . . . . . . . . . . . . . . . . Cpe01g01872 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo04g02258 . Cma04g02159 Cma15g00873 Car04g02094 Car15g00821 Cpe13g00440 . Bhi12g00997 . . . Hepe02g2579 . Lcy10g1572 Cla01g00675 Cam01g0706 . Cco01g0728 Clacu01g0694 Cmu01g0669 Cre09g1837 Lsi09g00733 Csa05g01309 Chy09g00458 Cme09g01265
Vvi1g574 . . . Bda11g00204 Bpe13g00543 . . . . . . . Car04g01000 . . . Cpe01g01873 . . . . . . . Cla07g00464 Cam07g0501 Cec07g0556 Cco07g0519 Clacu07g0509 Cmu07g0546 Cre07g0882 . . . . Lsi04g01032 . . . . . . Bda11g00204 . . . Bma06g01149 . Cmo04g02259 Cmo15g00907 Cma04g02160 Cma15g00871 Car04g02095 Car15g00819 Cpe13g00441 . Bhi12g01001 . . . . . . Cla01g00676 Cam01g0708 Cec01g0701 Cco01g0730 Clacu01g0695 Cmu01g0670 Cre09g1835 Lsi09g00734 Csa05g01310 . Cme09g01264
Vvi1g575 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g576 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g577 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g578 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g579 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g580 . . . . . . . . . . . . . Car04g00002 . . . . . . . . . . . . . . . . . . Cone19ag0672 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 58 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
11 2595737 2598468 + Bda004924.1 Bda11g00204 204
12 30431809 30433719 - XM_039050528.1 Bhi12g00996 996
12 30509874 30511759 + XM_039020414.1 Bhi12g00997 997
12 30542532 30548131 + XM_039019310.1 Bhi12g01001 1001
6 48412767 48416749 + Bma024249.1 Bma06g01149 1149
13 12718293 12720637 - Bpe010247.1 Bpe13g00543 543
1 7920938 7923222 - CaPI482276_01g007040.1 Cam01g0704 704
1 7930392 7932007 - CaPI482276_01g007050.1 Cam01g0705 705
1 7953822 7955412 + CaPI482276_01g007060.1 Cam01g0706 706
1 7961119 7965971 + CaPI482276_01g007080.1 Cam01g0708 708
7 7114710 7123416 - CaPI482276_07g005010.1 Cam07g0501 501
4 5780 7176 - Carg27083-RA Car04g00002 2
4 5751096 5754431 + Carg00176-RA Car04g01000 1000
4 17082420 17083231 - Carg17698-RA Car04g02091 2091
4 17086712 17088396 - Carg17700-RA Car04g02093 2093
4 17092715 17094475 + Carg17701-RA Car04g02094 2094
4 17099047 17102179 + Carg17702-RA Car04g02095 2095
15 4660546 4663792 - Carg01336-RA Car15g00819 819
15 4669021 4671598 - Carg01334-RA Car15g00821 821
15 4681930 4682187 + Carg01333-RA Car15g00822 822
1 7718539 7720768 - CcPI632755_01g007250.1 Cco01g0725 725
1 7745288 7747466 + CcPI632755_01g007270.1 Cco01g0727 727
1 7752236 7753802 + CcPI632755_01g007280.1 Cco01g0728 728
1 7759509 7765476 + CcPI632755_01g007300.1 Cco01g0730 730
7 6447623 6456347 - CcPI632755_07g005190.1 Cco07g0519 519
1 7797531 7797899 - CePI673135_01g006980.1 Cec01g0698 698
1 7804997 7806603 - CePI673135_01g006990.1 Cec01g0699 699
1 7823502 7836449 + CePI673135_01g007010.1 Cec01g0701 701
7 6683103 6691821 - CePI673135_07g005560.1 Cec07g0556 556
9 4070855 4074341 - Chy9G161740.1 Chy09g00458 458
9 4089362 4090979 + Chy9G161750.1 Chy09g00459 459
9 4095228 4100426 + Chy9G161760.1 Chy09g00460 460
1 7595552 7595920 - ClG42_01g0069200.10 Clacu01g0692 692
1 7602926 7604535 - ClG42_01g0069300.10 Clacu01g0693 693
1 7621455 7623037 + ClG42_01g0069400.10 Clacu01g0694 694
1 7628739 7634921 + ClG42_01g0069500.10 Clacu01g0695 695
7 6320740 6329350 - ClG42_07g0050900.10 Clacu07g0509 509
1 7999189 8001836 - ClCG01G006880.1 Cla01g00672 672
1 8020791 8023027 + ClCG01G006900.2 Cla01g00674 674
1 8027748 8029330 + ClCG01G006910.1 Cla01g00675 675
1 8034855 8041202 + ClCG01G006920.2 Cla01g00676 676
7 6392225 6400834 - ClCG07G004910.1 Cla07g00464 464
4 15136067 15136857 - CmaCh04G021560.1 Cma04g02156 2156
4 15139593 15141658 - CmaCh04G021580.1 Cma04g02158 2158
4 15145154 15147092 + CmaCh04G021590.1 Cma04g02159 2159
4 15149737 15154527 + CmaCh04G021600.1 Cma04g02160 2160
15 4396373 4411778 - CmaCh15G008710.1 Cma15g00871 871
15 4426600 4426896 + CmaCh15G008730.1 Cma15g00873 873
15 4426977 4428888 + CmaCh15G008740.1 Cma15g00874 874
9 17505692 17511215 - MELO3C005221.2.1 Cme09g01264 1264
9 17516587 17518486 - MELO3C005222.2.1 Cme09g01265 1265
9 17534463 17536508 + MELO3C005224.2.1 Cme09g01267 1267
9 17547655 17549348 + MELO3C005225.2.1 Cme09g01268 1268
4 16873421 16874306 - CmoCh04G022530.1 Cmo04g02253 2253
4 16877971 16879762 - CmoCh04G022550.1 Cmo04g02255 2255
4 16884100 16885928 + CmoCh04G022580.1 Cmo04g02258 2258
4 16889332 16894498 + CmoCh04G022590.1 Cmo04g02259 2259
15 4587759 4592805 - CmoCh15G009070.1 Cmo15g00907 907
15 4596553 4598813 - CmoCh15G009080.1 Cmo15g00908 908
1 7568944 7569312 - CmPI595203_01g006670.1 Cmu01g0667 667
1 7576285 7577894 - CmPI595203_01g006680.1 Cmu01g0668 668
1 7594818 7596400 + CmPI595203_01g006690.1 Cmu01g0669 669
1 7602104 7608281 + CmPI595203_01g006700.1 Cmu01g0670 670
7 6464371 6472979 - CmPI595203_07g005460.1 Cmu07g0546 546
9 1627763 1628479 - Conep09aG0037400.1 Cone9ag0366 366
19 5717957 5719877 - Conep19aG0069300.1 Cone19ag0672 672
1 16058461 16059413 - Cp4.1LG01g18720.1 Cpe01g01869 1869
1 16063845 16065529 - Cp4.1LG01g18740.1 Cpe01g01871 1871
1 16069850 16071534 + Cp4.1LG01g18680.1 Cpe01g01872 1872
1 16074972 16080028 + Cp4.1LG01g18690.1 Cpe01g01873 1873
13 4739919 4742599 + Cp4.1LG13g06470.1 Cpe13g00440 440
13 4745859 4750598 + Cp4.1LG13g06510.1 Cpe13g00441 441
7 7546995 7555773 - CrPI670011_07g008820.1 Cre07g0882 882
9 36719508 36724384 - CrPI670011_09g018350.1 Cre09g1835 1835
9 36730179 36731764 - CrPI670011_09g018370.1 Cre09g1837 1837
9 36753082 36753450 + CrPI670011_09g018400.1 Cre09g1840 1840
5 13870604 13872563 - CsaV3_5G017280.1 Csa05g01305 1305
5 13877689 13879871 - CsaV3_5G017290.1 Csa05g01306 1306
5 13903775 13905408 + CsaV3_5G017320.1 Csa05g01309 1309
5 13912491 13919371 + CsaV3_5G017330.1 Csa05g01310 1310
2 72776323 72778058 + Hsped.02g25790.1 Hepe02g2579 2579
10 40064805 40066917 - Maker00006909 Lcy10g1572 1572
10 40084878 40086865 + Maker00006873 Lcy10g1573 1573
4 11948798 11960065 + Lsi04G010320.1 Lsi04g01032 1032
9 8415685 8417082 - Lsi09G007320.1 Lsi09g00732 732
9 8445567 8454388 + Lsi09G007330.1 Lsi09g00733 733
9 8459934 8465287 + Lsi09G007340.1 Lsi09g00734 734
1 6420880 6421718 - Vvi1g571 Vvi1g571 571
1 6433122 6436008 - Vvi1g572 Vvi1g572 572
1 6436134 6443174 - Vvi1g573 Vvi1g573 573
1 6449550 6457538 + Vvi1g574 Vvi1g574 574
1 6459147 6466696 + Vvi1g575 Vvi1g575 575
1 6467602 6468781 - Vvi1g576 Vvi1g576 576
1 6469512 6470724 - Vvi1g577 Vvi1g577 577
1 6498775 6503087 - Vvi1g578 Vvi1g578 578
1 6571808 6583497 + Vvi1g579 Vvi1g579 579
1 6602501 6605920 + Vvi1g580 Vvi1g580 580
       

DecoBrowse