Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1409 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi5g1410 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi5g1411 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bhi12g01385 . . . . . . . . . . . . . Lsi09g01008 . . .
Vvi5g1412 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bhi12g01389 . . . . . Lcy10g0760 . . . . . . . Lsi09g01004 . . .
Vvi5g1413 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi5g1414 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi5g1415 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi5g1416 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bhi12g01390 . . . Hepe02g2121 . Lcy10g0767 . . . . . . . . . . .
Vvi5g1417 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi5g1418 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 626 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
12 44201410 44210677 - XM_039020125.1 Bhi12g01385 1385
12 44238354 44258994 - XM_039018405.1 Bhi12g01389 1389
12 44340579 44343422 + XM_039018929.1 Bhi12g01390 1390
2 56420278 56423295 + Hsped.02g21210.1 Hepe02g2121 2121
10 22771113 22788717 - Maker00031037 Lcy10g0760 760
10 23037320 23040426 + Maker00031031 Lcy10g0767 767
9 13680976 13685578 + Lsi09G010040.1 Lsi09g01004 1004
9 13762663 13763480 + Lsi09G010080.1 Lsi09g01008 1008
5 24744321 24745251 + Vvi5g1409 Vvi5g1409 1409
5 24747036 24749868 - Vvi5g1410 Vvi5g1410 1410
5 24750435 24753752 - Vvi5g1411 Vvi5g1411 1411
5 24754342 24762842 - Vvi5g1412 Vvi5g1412 1412
5 24763397 24776697 - Vvi5g1413 Vvi5g1413 1413
5 24776996 24786203 + Vvi5g1414 Vvi5g1414 1414
5 24787598 24790547 + Vvi5g1415 Vvi5g1415 1415
5 24791622 24795408 + Vvi5g1416 Vvi5g1416 1416
5 24796798 24802680 + Vvi5g1417 Vvi5g1417 1417
5 24809272 24818854 - Vvi5g1418 Vvi5g1418 1418
       

DecoBrowse