Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1260 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1261 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1262 . . . . . . . . . . . . . . . . . . . . . . . . Cla08g00315 Cam08g0751 Cec08g0301 . Clacu08g0464 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00259 . . .
Vvi18g1263 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1264 . . . . . Bpe04g00384 Bma04g00395 . . . . Cma09g01285 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g00827 . . . . . . . Car09g01099 . . . . . . . . . . . . . . . . . . Chy03g00283 Cme01g00709
Vvi18g1265 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag0750 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1266 Blo01g01786 . . . Bpe02g00155 . . Bma01g02572 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00815 Bda13g01439 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1267 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1268 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1269 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 2192 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
11 8075579 8078281 - Bda005566.1 Bda11g00815 815
13 37149760 37151503 + Bda000272.1 Bda13g01439 1439
1 57590023 57592726 + BLOR01786 Blo01g01786 1786
1 7783135 7784631 - Bma001047.1 Bma01g00827 827
1 83321177 83327665 + Bma003454.1 Bma01g02572 2572
4 3230136 3231326 + Bma018857.1 Bma04g00395 395
2 1078796 1081509 - Bpe008006.1 Bpe02g00155 155
4 2423087 2424277 + Bpe015071.1 Bpe04g00384 384
8 7461375 7464181 + CaPI482276_08g007510.1 Cam08g0751 751
9 11161171 11169712 + Carg24108-RA Car09g01099 1099
8 6544553 6545221 - CePI673135_08g003010.1 Cec08g0301 301
3 3020869 3028786 - Chy3G052630.1 Chy03g00283 283
8 7347637 7357424 + ClG42_08g0046400.10 Clacu08g0464 464
8 7400253 7411774 + ClCG08G003050.1 Cla08g00315 315
9 8837668 8847777 + CmaCh09G012850.1 Cma09g01285 1285
1 6656238 6659613 - MELO3C023684.2.1 Cme01g00709 709
17 5587275 5601565 - Conep17aG0076800.1 Cone17ag0750 750
8 5908203 5932254 - Lsi08G002590.1 Lsi08g00259 259
18 14385808 14386706 - Vvi18g1260 Vvi18g1260 1260
18 14802634 14803924 + Vvi18g1261 Vvi18g1261 1261
18 15160582 15161347 + Vvi18g1262 Vvi18g1262 1262
18 15773212 15774934 - Vvi18g1263 Vvi18g1263 1263
18 15784877 15786089 - Vvi18g1264 Vvi18g1264 1264
18 15792544 15844126 - Vvi18g1265 Vvi18g1265 1265
18 15866680 15868604 - Vvi18g1266 Vvi18g1266 1266
18 15868704 15869062 + Vvi18g1267 Vvi18g1267 1267
18 15879503 15885288 + Vvi18g1268 Vvi18g1268 1268
18 15898546 15905025 + Vvi18g1269 Vvi18g1269 1269
       

DecoBrowse