Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g44 . . . . . . . . . . . . . . . . . Bhi09g03554 . . . . . . Cla11g01691 Cam11g1755 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g45 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1027 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g46 . . . . . . . . . . . . . . . . . Bhi09g03552 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g47 . . . . . . . . . . . . . . . . . Bhi09g03550 . . . . . . . . . . . . . . . . . . . Chy07g00005 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g48 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme07g00512 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g49 . . . . . . . . . . . . . . . . . Bhi09g03548 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo09g00829 . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g50 . . . . . . . . . . . . . . . . . Bhi09g03547 . . . . . . . . . . . . . . . . . . . . Cme07g00514 Blo07g00995 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g51 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g52 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g53 . . . Bda09g00550 . . . . . . . . . Car09g00749 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 2250 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
9 7196760 7199051 - Bda031158.1 Bda09g00550 550
9 89226707 89241834 + XM_039044186.1 Bhi09g03547 3547
9 89231930 89241834 + XM_039044183.1 Bhi09g03548 3548
9 89232029 89241834 + XM_039044182.1 Bhi09g03550 3550
9 89291382 89305513 + XM_039042134.1 Bhi09g03552 3552
9 89291531 89305513 + XM_039042136.1 Bhi09g03554 3554
7 29458698 29459361 - BLOR18927 Blo07g00995 995
11 30096990 30098206 - CaPI482276_11g017550.1 Cam11g1755 1755
9 4448565 4452554 - Carg17071-RA Car09g00749 749
7 95537 95978 + Chy7G128350.1 Chy07g00005 5
11 30471360 30473476 - ClCG11G017230.1 Cla11g01691 1691
7 4257093 4263112 + MELO3C032471.2.1 Cme07g00512 512
7 4331718 4334692 + MELO3C025661.2.1 Cme07g00514 514
9 4262496 4266144 - CmoCh09G008290.1 Cmo09g00829 829
14 8568692 8576717 + Conep14aG0104700.1 Cone14ag1027 1027
19 496540 500699 - Vvi19g44 Vvi19g44 44
19 501305 518217 - Vvi19g45 Vvi19g45 45
19 524431 526729 - Vvi19g46 Vvi19g46 46
19 526729 528866 - Vvi19g47 Vvi19g47 47
19 535126 547165 - Vvi19g48 Vvi19g48 48
19 548334 549288 - Vvi19g49 Vvi19g49 49
19 549307 557539 - Vvi19g50 Vvi19g50 50
19 557584 558549 - Vvi19g51 Vvi19g51 51
19 559936 564311 + Vvi19g52 Vvi19g52 52
19 572712 579099 + Vvi19g53 Vvi19g53 53
       

DecoBrowse