Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g914 . . . . . . . . . . . . . . . Cpe05g00602 . . . . . . . . . . . . . . . . . . . . . Chy09g01436 . . . . . . Bpe12g00353 . . . . . . . . . . Cpe13g00313 Bhi12g00632 . . Lac11g0151 Hepe06g0789 . Lcy12g0130 . . . . . . . Lsi09g00024 . . Cme09g01982
Vvi16g915 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g916 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g917 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g918 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g919 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g920 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g921 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g922 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g923 . . . . . Bpe07g01106 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 1952 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
12 19291202 19298897 - XM_039018540.1 Bhi12g00632 632
7 16338869 16344899 + Bpe021944.1 Bpe07g01106 1106
12 8621821 8624081 + Bpe005608.1 Bpe12g00353 353
9 15929908 15933378 - Chy9G171520.1 Chy09g01436 1436
9 23670692 23674630 - MELO3C005884.2.1 Cme09g01982 1982
5 3659305 3663994 + Cp4.1LG05g06030.1 Cpe05g00602 602
13 2648928 2654718 - Cp4.1LG13g03130.1 Cpe13g00313 313
6 54562306 54566495 - Hsped.06g07890.1 Hepe06g0789 789
11 1393281 1401353 - Lag0030789.1 Lac11g0151 151
12 1620179 1624316 - Maker00038697 Lcy12g0130 130
9 216868 222486 + Lsi09G000240.1 Lsi09g00024 24
16 20803337 20807607 - Vvi16g914 Vvi16g914 914
16 20812478 20816151 - Vvi16g915 Vvi16g915 915
16 20826878 20828694 - Vvi16g916 Vvi16g916 916
16 20829566 20831385 + Vvi16g917 Vvi16g917 917
16 20838695 20844278 - Vvi16g918 Vvi16g918 918
16 20848482 20851612 + Vvi16g919 Vvi16g919 919
16 20871740 20872052 - Vvi16g920 Vvi16g920 920
16 20886748 20888112 + Vvi16g921 Vvi16g921 921
16 20893113 20900760 - Vvi16g922 Vvi16g922 922
16 20901738 20931865 + Vvi16g923 Vvi16g923 923
       

DecoBrowse