Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1490 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1491 . . . . . . . . . . . . . . . . . . . . . . . . Cla08g00035 Cam08g0034 Cec08g0216 Cco08g0089 Clacu08g0051 Cmu08g0050 Cre08g0040 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00026 . . .
Vvi18g1492 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bhi06g00243 . . . . . . . . . . . . . . . . .
Vvi18g1493 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bhi06g00244 . . . . . . . . . . . . . . . . .
Vvi18g1494 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1495 . . . . . . . . . . . . . . . . . . . . . . . . Cla08g00034 Cam08g0033 Cec08g0217 . Clacu08g0050 Cmu08g0049 Cre08g0038 . . . . . . . . . . . . . . . . Sed11g1630 . . . . . . . . Bhi06g00246 Tan10g2051 Cmetu09g1971 . . . . . . . . . . . Lsi08g00025 . . .
Vvi18g1496 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1497 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1498 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1499 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 2215 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
6 5755226 5756754 - XM_039035343.1 Bhi06g00243 243
6 5755226 5756747 - XM_039035345.1 Bhi06g00244 244
6 5806571 5810899 + XM_039035114.1 Bhi06g00246 246
8 791918 795739 - CaPI482276_08g000330.1 Cam08g0033 33
8 807397 819836 + CaPI482276_08g000340.1 Cam08g0034 34
8 1419938 1433079 + CcPI632755_08g000890.1 Cco08g0089 89
8 4037428 4050544 - CePI673135_08g002160.1 Cec08g0216 216
8 4068754 4073627 + CePI673135_08g002170.1 Cec08g0217 217
8 1206344 1211311 - ClG42_08g0005000.10 Clacu08g0050 50
8 1220087 1233213 + ClG42_08g0005100.10 Clacu08g0051 51
8 1030469 1044474 - ClCG08G000330.2 Cla08g00034 34
8 1051326 1064678 + ClCG08G000340.1 Cla08g00035 35
9 21702064 21706542 + PI0002824.2 Cmetu09g1971 1971
8 1124736 1129705 - CmPI595203_08g000490.1 Cmu08g0049 49
8 1138463 1151586 + CmPI595203_08g000500.1 Cmu08g0050 50
8 932676 936497 - CrPI670011_08g000380.1 Cre08g0038 38
8 996505 1009200 + CrPI670011_08g000400.1 Cre08g0040 40
8 665185 669374 - Lsi08G000250.1 Lsi08g00025 25
8 676363 691024 + Lsi08G000260.1 Lsi08g00026 26
11 31649154 31654076 + Sed0021340.2 Sed11g1630 1630
10 64939970 64944863 + Tan0017845.1 Tan10g2051 2051
18 23345965 23348947 - Vvi18g1490 Vvi18g1490 1490
18 23364124 23402122 + Vvi18g1491 Vvi18g1491 1491
18 23406741 23419601 + Vvi18g1492 Vvi18g1492 1492
18 23420010 23421145 + Vvi18g1493 Vvi18g1493 1493
18 23429215 23433809 - Vvi18g1494 Vvi18g1494 1494
18 23440763 23448827 + Vvi18g1495 Vvi18g1495 1495
18 23461969 23465483 + Vvi18g1496 Vvi18g1496 1496
18 23472856 23476504 - Vvi18g1497 Vvi18g1497 1497
18 23508907 23510066 - Vvi18g1498 Vvi18g1498 1498
18 23528928 23531125 + Vvi18g1499 Vvi18g1499 1499
       

DecoBrowse