Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g952 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g953 . . . . . . . . . . . . . . . . Cpe02g00579 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g954 . . . . . . . . . . . . . . . . Cpe02g00578 . . . . . . . . . . . . . . . . . Cone9ag0348 . . . . Blo03g00913 . . . . . . . . . . . . . . . Cpe06g00599 . . . . . . . . . . . . . . . . . .
Vvi2g955 . . . . . . . . . Cmo16g00554 . . . . . Cpe14g00429 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma16g00506 . . Cpe01g00541 . . . . . . . . . . . . . . . . Csa04g00713 . .
Vvi2g956 . . . . . . Bma07g01215 . . Cmo16g00553 . . . . . Cpe14g00428 . . . . . . . . . . . . . . . . . . Cone9ag0347 . . . . Blo03g00914 . . Bda09g00471 Bpe08g01057 . . . . . . . Cma16g00505 . . Cpe01g00542 . . . . . . . . . . . . . . . . Csa04g00714 . .
Vvi2g957 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma05g00909 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g958 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g959 . . . . . . Bma07g01214 . . . . . . . . . Cpe02g00576 . . . . . . . . . . . . . . . . . Cone9ag0345 . . . . Blo03g00915 . . Bda09g00473 Bpe08g01056 . . . . . . . . . . . Cpe06g00601 . . . . . . . . . . . . . . . . . .
Vvi2g960 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone1ag0409 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g961 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 236 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
9 6155320 6157305 - Bda031066.1 Bda09g00471 471
9 6217844 6231422 + Bda034100 Bda09g00473 473
3 35134424 35137865 + BLOR12094 Blo03g00913 913
3 35138653 35140982 - BLOR12095 Blo03g00914 914
3 35153369 35159183 + BLOR12096 Blo03g00915 915
5 46955063 46960916 + Bma022030.1 Bma05g00909 909
7 46948095 46953690 - Bma026463.2 Bma07g01214 1214
7 46958253 46960163 + Bma026464.1 Bma07g01215 1215
8 12730750 12736455 - Bpe023180.1 Bpe08g01056 1056
8 12743763 12745690 + Bpe023181.1 Bpe08g01057 1057
16 2597830 2600656 + CmaCh16G005050.1 Cma16g00505 505
16 2604070 2607982 - CmaCh16G005060.1 Cma16g00506 506
16 2690840 2693447 + CmoCh16G005530.1 Cmo16g00553 553
16 2696892 2701131 - CmoCh16G005540.1 Cmo16g00554 554
1 3569118 3570074 - Conep01aG0042900.1 Cone1ag0409 409
9 1510726 1515184 - Conep09aG0035000.1 Cone9ag0345 345
9 1528409 1530430 + Conep09aG0035200.1 Cone9ag0347 347
9 1535060 1540368 - Conep09aG0035300.1 Cone9ag0348 348
1 3102534 3108288 + Cp4.1LG01g01260.1 Cpe01g00541 541
1 3111400 3114082 - Cp4.1LG01g01170.1 Cpe01g00542 542
2 3432006 3438152 + Cp4.1LG02g03110.1 Cpe02g00576 576
2 3445287 3453000 - Cp4.1LG02g02850.1 Cpe02g00578 578
2 3454941 3467800 + Cp4.1LG02g02940.1 Cpe02g00579 579
6 3686990 3696812 + Cp4.1LG06g06050.1 Cpe06g00599 599
6 3703143 3710805 - Cp4.1LG06g06120.1 Cpe06g00601 601
14 2689691 2692444 + Cp4.1LG14g02890.1 Cpe14g00428 428
14 2696002 2699999 - Cp4.1LG14g02780.1 Cpe14g00429 429
4 4829185 4834469 + CsaV3_4G007130.1 Csa04g00713 713
4 4840262 4842948 - CsaV3_4G007140.1 Csa04g00714 714
2 18146966 18147327 - Vvi2g952 Vvi2g952 952
2 18148042 18167990 - Vvi2g953 Vvi2g953 953
2 18191083 18218549 + Vvi2g954 Vvi2g954 954
2 18220532 18246437 + Vvi2g955 Vvi2g955 955
2 18248688 18251549 - Vvi2g956 Vvi2g956 956
2 18277060 18278626 - Vvi2g957 Vvi2g957 957
2 18286858 18288238 - Vvi2g958 Vvi2g958 958
2 18311222 18323244 + Vvi2g959 Vvi2g959 959
2 18336212 18337133 - Vvi2g960 Vvi2g960 960
2 18337137 18337386 - Vvi2g961 Vvi2g961 961
       

DecoBrowse