Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g962 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g963 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g964 . . . Bda08g00438 . . . . . . . . . . . . Cpe02g00575 . . . . . . . . . . . . . . . . . Cone9ag0343 . . . . . . . . . . . . . . . . . . . . Cpe06g00602 . . . . . . . . . . . . . . . . . .
Vvi2g965 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g966 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g967 . . . . . . Bma07g01213 . . . . . . . . . Cpe02g00574 . . . . . . . . . . . . . . . . . Cone9ag0342 . . . . . . . Bda09g00474 Bpe08g01055 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g968 . . . . . Bpe07g00048 . . Cmo06g00554 Cmo16g00550 . . . . . Cpe14g00425 . . . . . . . . . . . . . . . . . . Cone9ag0341 . . . . . . . . . . . Bma12g00629 . . . Cma06g00550 Cma16g00503 Car06g00489 . Cpe01g00545 . . . . . . . . . . . . . . . . Csa04g00716 . .
Vvi2g969 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g970 . . . . . . Bma07g01212 . . . . . . . . . Cpe02g00548 . . . . . . . . . . . . . . . . . Cone9ag0339 . . . . Blo03g00917 . . Bda09g00475 Bpe08g01054 . . . . . . . . . . . Cpe06g00603 . . . . . . . . . . . . . . . . . .
Vvi2g971 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 237 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
8 4394644 4397819 - Bda024885.1 Bda08g00438 438
9 6232204 6237145 - Bda031068.1 Bda09g00474 474
9 6241492 6245219 + Bda031069.1 Bda09g00475 475
3 35175615 35179735 + BLOR12098 Blo03g00917 917
7 46921886 46934953 - Bma026461.1 Bma07g01212 1212
7 46942593 46946500 + Bma026462.1 Bma07g01213 1213
12 27530592 27532227 + Bma007806.1 Bma12g00629 629
7 409729 411685 - Bpe020861.1 Bpe07g00048 48
8 12719588 12724138 - Bpe023178.1 Bpe08g01054 1054
8 12724962 12729814 + Bpe023179.1 Bpe08g01055 1055
6 2702294 2708157 - Carg16241-RA Car06g00489 489
6 2606979 2613405 - CmaCh06G005500.1 Cma06g00550 550
16 2563264 2566503 - CmaCh16G005030.1 Cma16g00503 503
6 2680272 2687548 - CmoCh06G005540.1 Cmo06g00554 554
16 2653973 2657229 - CmoCh16G005500.1 Cmo16g00550 550
9 1479254 1481889 - Conep09aG0034400.1 Cone9ag0339 339
9 1498424 1501789 + Conep09aG0034600.1 Cone9ag0341 341
9 1502866 1504951 + Conep09aG0034700.1 Cone9ag0342 342
9 1504969 1506048 + Conep09aG0034800.1 Cone9ag0343 343
1 3141466 3145277 + Cp4.1LG01g01210.1 Cpe01g00545 545
2 3275187 3277344 - Cp4.1LG02g03220.1 Cpe02g00548 548
2 3422069 3426184 + Cp4.1LG02g03100.1 Cpe02g00574 574
2 3426648 3430798 - Cp4.1LG02g03030.1 Cpe02g00575 575
6 3711305 3715228 + Cp4.1LG06g06040.1 Cpe06g00602 602
6 3715739 3720114 + Cp4.1LG06g06010.1 Cpe06g00603 603
14 2654343 2658455 - Cp4.1LG14g02950.1 Cpe14g00425 425
4 4902263 4906655 + CsaV3_4G007160.1 Csa04g00716 716
2 18342283 18345229 + Vvi2g962 Vvi2g962 962
2 18345601 18354600 - Vvi2g963 Vvi2g963 963
2 18359521 18364201 - Vvi2g964 Vvi2g964 964
2 18395297 18399974 - Vvi2g965 Vvi2g965 965
2 18405632 18408786 - Vvi2g966 Vvi2g966 966
2 18420865 18426824 - Vvi2g967 Vvi2g967 967
2 18431307 18435037 - Vvi2g968 Vvi2g968 968
2 18476518 18476964 - Vvi2g969 Vvi2g969 969
2 18515320 18524865 + Vvi2g970 Vvi2g970 970
2 18524901 18525066 - Vvi2g971 Vvi2g971 971
       

DecoBrowse