Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1302 . . . . Bpe15g00412 . . . Cmo02g00634 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda14g01045 . . Bma03g01020 . . . . . . . . Cpe05g01059 . . . . . . . . . . . . . . . . . . .
Vvi4g1303 Blo04g00954 . . . Bpe15g00413 . . . . . Cma03g01098 . Car03g00989 . Sed14g0233 . Cpe10g00334 Bhi03g01343 Tan03g1302 Cmetu08g1462 . Hepe04g1108 . . Cla01g01511 Cam01g1579 Cec04g1223 Cco04g1292 Clacu01g1605 Cmu01g1492 Cre04g1171 . . . . Lsi01g01156 . . Cme08g01089 . . . Bda14g01044 . . Bma03g01019 . . Cmo03g01083 . . . . . . . . . . . . . . . . . . . . . . Csa06g02775 Chy02g01059 .
Vvi4g1304 . Blo16g00542 . . . Bpe13g00039 . . Cmo02g00635 . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1280 . . . . . . . Bda11g01384 . . . . Bma06g00494 . . . . . . . Cpe05g01058 . Bhi10g01677 . . . Hepe08g1238 . . . . . . . . . . . . Cme11g00055
Vvi4g1305 . Blo16g00543 . . . Bpe13g00040 . . . Cmo20g01069 . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1279 . . . . . . . Bda11g01385 Bda14g01043 . . . Bma06g00493 . . . . Cma20g01061 . . . . . . . . . . . Cla02g00052 Cam02g0053 Cec02g0054 Cco02g0046 Clacu02g0052 Cmu02g0052 . Lsi10g00731 . . Cme11g00054
Vvi4g1306 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g1307 . . . . . . . . Cmo02g00637 Cmo20g01068 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed05g3855 . . . Cma20g01060 . . Cpe05g01056 Cpe16g00085 Bhi10g01683 Tan07g0851 Cmetu11g0266 . Hepe08g1236 . . Cla02g00051 Cam02g0052 Cec02g0052 Cco02g0045 Clacu02g0051 Cmu02g0051 Cre02g0390 Lsi10g00734 . . Cme11g00053
Vvi4g1308 . Blo16g00544 . . . Bpe13g00041 Bma09g00223 . . . . Cma07g00806 Car03g00990 . . . Cpe10g00332 . . . . . . . Cla01g01509 Cam01g1577 Cec04g1221 Cco04g1290 Clacu01g1603 Cmu01g1490 Cre04g1169 . . Cone6ag1278 . . . . . . . Bda11g01386 . . . . . . Cmo03g01084 Cmo07g00833 . . . . . . . . . . . . . . . . . . . . . Csa06g02773 . .
Vvi4g1309 . . . . . . . . . . Cma03g01099 . . Car07g00793 . Cpe19g00524 . Bhi03g01340 . . . Hepe04g1107 . . . . . . . . . . . Cone6ag1277 . Lsi01g01158 . . Cme08g01090 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy02g01060 .
Vvi4g1310 . Blo16g00545 . . . Bpe13g00042 Bma09g00222 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed02g1661 . . . . . . . . Bhi10g01685 Tan07g0850 Cmetu06g0985 . Hepe08g1235 . . Cla02g00049 Cam02g0051 Cec02g0051 Cco02g0044 Clacu02g0050 Cmu02g0050 Cre02g0389 Lsi10g00740 . . Cme11g00050
Vvi4g1311 . Blo16g00546 . . . Bpe13g00043 Bma09g00221 . . Cmo20g01066 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01387 . . . . . . . . . Cma20g01058 . . . Cpe16g00087 Bhi10g01688 . . . . . . Cla02g00047 Cam02g0049 Cec02g0049 Cco02g0042 Clacu02g0048 Cmu02g0048 Cre02g0387 Lsi10g00742 . . Cme11g00048
   
Previous Page 479 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
11 17223227 17227283 + Bda007939.5 Bda11g01384 1384
11 17240879 17242876 + Bda007940.1 Bda11g01385 1385
11 17288313 17293460 + Bda007942.1 Bda11g01386 1386
11 17319438 17320719 + Bda007944.1 Bda11g01387 1387
14 8779727 8781723 + Bda027853.2 Bda14g01043 1043
14 8796952 8798387 + Bda027854.2 Bda14g01044 1044
14 8799624 8801790 - Bda027855.1 Bda14g01045 1045
3 27911822 27913429 + XM_039027821.1 Bhi03g01340 1340
3 28023455 28028121 + XM_039025267.1 Bhi03g01343 1343
10 42404992 42411605 + XM_039046638.1 Bhi10g01677 1677
10 42466255 42467995 - XM_039046809.1 Bhi10g01683 1683
10 42526368 42532273 - XM_039044831.1 Bhi10g01685 1685
10 42610024 42615770 + XM_039045506.1 Bhi10g01688 1688
4 11627476 11628873 + BLOR13866 Blo04g00954 954
16 22342777 22356029 + BLOR07790 Blo16g00542 542
16 22396803 22398716 + BLOR07791 Blo16g00543 543
16 22431760 22437027 + BLOR07792 Blo16g00544 544
16 22437560 22440020 - BLOR07793 Blo16g00545 545
16 22482993 22484595 + BLOR07794 Blo16g00546 546
3 11333845 11335140 + Bma031012 Bma03g01019 1019
3 11336371 11338657 - Bma017368.1 Bma03g01020 1020
6 23278885 23280782 - Bma023342.1 Bma06g00493 493
6 23428444 23434147 - Bma023343.2 Bma06g00494 494
9 9468069 9469353 - Bma028989.1 Bma09g00221 221
9 9552262 9554500 + Bma028994.1 Bma09g00222 222
9 9557208 9560272 - Bma028995.1 Bma09g00223 223
13 1243205 1247860 + Bpe006126.1 Bpe13g00039 39
13 1259065 1260369 + Bpe006127.1 Bpe13g00040 40
13 1270873 1273921 + Bpe006128.1 Bpe13g00041 41
13 1276664 1278821 - Bpe006129.2 Bpe13g00042 42
13 1286492 1287776 + Bpe006130.1 Bpe13g00043 43
15 15634168 15636433 + Bpe001350.1 Bpe15g00412 412
15 15637410 15639107 - Bpe001351.1 Bpe15g00413 413
1 29258655 29264143 + CaPI482276_01g015770.1 Cam01g1577 1577
1 29272495 29278634 + CaPI482276_01g015790.1 Cam01g1579 1579
2 1609322 1614199 - CaPI482276_02g000490.1 Cam02g0049 49
2 1628337 1633175 + CaPI482276_02g000510.1 Cam02g0051 51
2 1636183 1637625 - CaPI482276_02g000520.1 Cam02g0052 52
2 1643577 1654227 - CaPI482276_02g000530.1 Cam02g0053 53
3 7620477 7622884 - Carg10531-RA Car03g00989 989
3 7623531 7628958 - Carg10530-RA Car03g00990 990
7 4166161 4168604 - Carg05317-RA Car07g00793 793
2 476958 481924 - CcPI632755_02g000420.1 Cco02g0042 42
2 496336 500921 + CcPI632755_02g000440.1 Cco02g0044 44
2 503894 505331 - CcPI632755_02g000450.1 Cco02g0045 45
2 511522 522065 - CcPI632755_02g000460.1 Cco02g0046 46
4 28191974 28194948 + CcPI632755_04g012900.1 Cco04g1290 1290
4 28203291 28209516 + CcPI632755_04g012920.1 Cco04g1292 1292
2 483120 488042 - CePI673135_02g000490.1 Cec02g0049 49
2 502462 507159 + CePI673135_02g000510.1 Cec02g0051 51
2 510180 511621 - CePI673135_02g000520.1 Cec02g0052 52
2 523623 528584 - CePI673135_02g000540.1 Cec02g0054 54
4 31744852 31747849 + CePI673135_04g012210.1 Cec04g1221 1221
4 31759680 31765846 + CePI673135_04g012230.1 Cec04g1223 1223
2 7292557 7296342 - Chy2G033260.1 Chy02g01059 1059
2 7296564 7299301 - Chy2G033270.1 Chy02g01060 1060
1 28054063 28057052 + ClG42_01g0160300.10 Clacu01g1603 1603
1 28065359 28071547 + ClG42_01g0160500.10 Clacu01g1605 1605
2 504417 509318 - ClG42_02g0004800.10 Clacu02g0048 48
2 523473 528208 + ClG42_02g0005000.10 Clacu02g0050 50
2 530735 532146 - ClG42_02g0005100.10 Clacu02g0051 51
2 538124 548579 - ClG42_02g0005200.10 Clacu02g0052 52
1 29574212 29579150 + ClCG01G015370.1 Cla01g01509 1509
1 29586713 29593080 + ClCG01G015390.1 Cla01g01511 1511
2 497987 501622 - ClCG02G000450.1 Cla02g00047 47
2 515612 520837 + ClCG02G000470.1 Cla02g00049 49
2 521761 524670 - ClCG02G000490.2 Cla02g00051 51
2 530740 544377 - ClCG02G000500.2 Cla02g00052 52
3 7519453 7521902 - CmaCh03G010980.1 Cma03g01098 1098
3 7522637 7525254 - CmaCh03G010990.1 Cma03g01099 1099
7 3691354 3696297 - CmaCh07G008060.1 Cma07g00806 806
20 7963511 7967097 - CmaCh20G010580.1 Cma20g01058 1058
20 7992156 7992915 - CmaCh20G010600.1 Cma20g01060 1060
20 7999324 8003743 - CmaCh20G010610.1 Cma20g01061 1061
8 7199519 7204887 - MELO3C008059.2.1 Cme08g01089 1089
8 7206043 7208141 - MELO3C008060.2.1 Cme08g01090 1090
11 408257 412715 - MELO3C023232.2.1 Cme11g00048 48
11 423043 426461 + MELO3C023234.2.1 Cme11g00050 50
11 455038 456186 - MELO3C023237.2.1 Cme11g00053 53
11 458231 464800 - MELO3C023238.2.1 Cme11g00054 54
11 467189 473354 - MELO3C023239.2.1 Cme11g00055 55
6 1122321 1125821 - PI0027702.1 Cmetu06g0985 985
8 18319154 18323254 + PI0000702.1 Cmetu08g1462 1462
11 30554960 30556229 + PI0028419.1 Cmetu11g0266 266
2 3940946 3946070 + CmoCh02G006340.1 Cmo02g00634 634
2 3947861 3954880 + CmoCh02G006350.1 Cmo02g00635 635
2 3965223 3967135 - CmoCh02G006370.1 Cmo02g00637 637
3 8099796 8101969 - CmoCh03G010830.1 Cmo03g01083 1083
3 8103068 8109074 - CmoCh03G010840.1 Cmo03g01084 1084
7 3890494 3890829 - CmoCh07G008330.1 Cmo07g00833 833
20 9869084 9872562 - CmoCh20G010660.1 Cmo20g01066 1066
20 9895642 9896484 - CmoCh20G010680.1 Cmo20g01068 1068
20 9902774 9907008 - CmoCh20G010690.1 Cmo20g01069 1069
1 28402412 28405401 + CmPI595203_01g014900.1 Cmu01g1490 1490
1 28413709 28419890 + CmPI595203_01g014920.1 Cmu01g1492 1492
2 503703 508605 - CmPI595203_02g000480.1 Cmu02g0048 48
2 522753 527485 + CmPI595203_02g000500.1 Cmu02g0050 50
2 530020 531431 - CmPI595203_02g000510.1 Cmu02g0051 51
2 537415 547818 - CmPI595203_02g000520.1 Cmu02g0052 52
6 10198074 10199335 - Conep06aG0132500.1 Cone6ag1277 1277
6 10199608 10213069 - Conep06aG0132600.1 Cone6ag1278 1278
6 10230694 10232816 - Conep06aG0132700.1 Cone6ag1279 1279
6 10233320 10238270 - Conep06aG0132800.1 Cone6ag1280 1280
5 6987264 6988333 + Cp4.1LG05g10570.1 Cpe05g01056 1056
5 6995321 7002706 - Cp4.1LG05g10650.1 Cpe05g01058 1058
5 7003944 7010565 - Cp4.1LG05g10630.1 Cpe05g01059 1059
10 1936681 1941274 + Cp4.1LG10g03640.1 Cpe10g00332 332
10 1943662 1947182 + Cp4.1LG10g03610.1 Cpe10g00334 334
16 1628275 1629030 + Cp4.1LG16g00770.1 Cpe16g00085 85
16 1645414 1648871 + Cp4.1LG16g00860.1 Cpe16g00087 87
19 4454144 4458860 + Cp4.1LG19g12170.1 Cpe19g00524 524
2 1028437 1033237 - CrPI670011_02g003870.1 Cre02g0387 387
2 1047680 1052476 + CrPI670011_02g003890.1 Cre02g0389 389
2 1055500 1057304 - CrPI670011_02g003900.1 Cre02g0390 390
4 30264058 30267054 + CrPI670011_04g011690.1 Cre04g1169 1169
4 30275446 30281646 + CrPI670011_04g011710.1 Cre04g1171 1171
6 24196094 24198993 + CsaV3_6G041590.1 Csa06g02773 2773
6 24202877 24212189 + CsaV3_6G041610.1 Csa06g02775 2775
4 65961981 65963889 + Hsped.04g11070.1 Hepe04g1107 1107
4 65966252 65970481 + Hsped.04g11080.1 Hepe04g1108 1108
8 13124625 13128949 + Hsped.08g12350.1 Hepe08g1235 1235
8 13132950 13134340 - Hsped.08g12360.1 Hepe08g1236 1236
8 13151133 13159577 - Hsped.08g12380.1 Hepe08g1238 1238
1 9731205 9738588 - Lsi01G011570.1 Lsi01g01156 1156
1 9740127 9741968 - Lsi01G011580.1 Lsi01g01158 1158
10 10130596 10146067 + Lsi10G007320.1 Lsi10g00731 731
10 10152453 10154038 + Lsi10G007340.1 Lsi10g00734 734
10 10218820 10223908 - Lsi10G007400.1 Lsi10g00740 740
10 10255202 10259087 + Lsi10G007420.1 Lsi10g00742 742
2 51879225 51883294 - Sed0013234.1 Sed02g1661 1661
5 46144580 46145953 - Sed0001252.1 Sed05g3855 3855
14 2570701 2580939 - Sed0017320.1 Sed14g0233 233
3 69486439 69495355 + Tan0018631.1 Tan03g1302 1302
7 14406371 14410379 + Tan0007067.1 Tan07g0850 850
7 14415095 14416452 - Tan0010971.1 Tan07g0851 851
4 22820967 22829378 + Vvi4g1302 Vvi4g1302 1302
4 22840753 22842681 - Vvi4g1303 Vvi4g1303 1303
4 22853877 22885181 + Vvi4g1304 Vvi4g1304 1304
4 22891131 22902646 + Vvi4g1305 Vvi4g1305 1305
4 22902951 22906517 - Vvi4g1306 Vvi4g1306 1306
4 22916096 22917542 + Vvi4g1307 Vvi4g1307 1307
4 22934298 22945589 + Vvi4g1308 Vvi4g1308 1308
4 22946144 22947428 + Vvi4g1309 Vvi4g1309 1309
4 22947572 22951180 - Vvi4g1310 Vvi4g1310 1310
4 22974119 22978475 + Vvi4g1311 Vvi4g1311 1311
       

DecoBrowse