Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g689 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi5g690 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi5g691 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi5g692 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi5g693 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi5g694 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi5g695 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi5g696 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi5g697 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi5g698 . . . . Bpe04g01007 Bpe14g01248 . . . . Cma06g01329 . Car06g01141 . . Cpe08g00331 . . . . . . . . . . . . . . . . Cone15ag0158 Cone7ag0320 Cone4ag0325 Lsi05g01726 . . Cme06g00499 Blo02g00737 Blo07g00257 Bda11g00627 Bda13g00068 . Bpe13g00561 . . . Cmo06g01333 . . . . . . . . . . . . . . Cla05g00450 Cam05g0491 Cec05g0500 Cco05g0499 Clacu05g0486 Cmu05g0463 Cre05g0526 . Csa03g01216 Chy06g00478 .
   
Previous Page 554 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
11 6299714 6301036 + Bda005372.1 Bda11g00627 627
13 912164 914154 - Bda000914.1 Bda13g00068 68
2 24013780 24020399 + BLOR10467 Blo02g00737 737
7 3132209 3133609 + BLOR18189 Blo07g00257 257
4 7031918 7034972 + Bpe015674.1 Bpe04g01007 1007
13 12813311 12814632 - Bpe010264.1 Bpe13g00561 561
14 9422655 9424848 + Bpe014608.1 Bpe14g01248 1248
5 4331319 4334192 - CaPI482276_05g004910.1 Cam05g0491 491
6 8472671 8474948 - Carg06216-RA Car06g01141 1141
5 3994410 3996659 - CcPI632755_05g004990.1 Cco05g0499 499
5 3988294 3990543 - CePI673135_05g005000.1 Cec05g0500 500
6 3192549 3200479 - Chy6G110060.1 Chy06g00478 478
5 4036647 4039514 - ClG42_05g0048600.10 Clacu05g0486 486
5 4020410 4023277 - ClCG05G004360.2 Cla05g00450 450
6 8747442 8750246 - CmaCh06G013290.1 Cma06g01329 1329
6 3143794 3147073 - MELO3C006429.2.1 Cme06g00499 499
6 9926979 9929743 - CmoCh06G013330.1 Cmo06g01333 1333
5 3872803 3875671 - CmPI595203_05g004630.1 Cmu05g0463 463
4 1475773 1478289 + Conep04aG0033700.1 Cone4ag0325 325
7 1386460 1388792 + Conep07aG0032800.1 Cone7ag0320 320
15 766781 768328 + Conep15aG0016200.1 Cone15ag0158 158
8 2069294 2072637 + Cp4.1LG08g03610.1 Cpe08g00331 331
5 4671025 4673778 - CrPI670011_05g005260.1 Cre05g0526 526
3 9379775 9383591 - CsaV3_3G012160.1 Csa03g01216 1216
5 24706467 24709493 + Lsi05G017260.1 Lsi05g01726 1726
5 7787810 7788943 + Vvi5g689 Vvi5g689 689
5 7792152 7793327 + Vvi5g690 Vvi5g690 690
5 7797394 7797916 - Vvi5g691 Vvi5g691 691
5 7805372 7805981 + Vvi5g692 Vvi5g692 692
5 7811924 7812966 + Vvi5g693 Vvi5g693 693
5 7815973 7816568 + Vvi5g694 Vvi5g694 694
5 7840975 7849793 - Vvi5g695 Vvi5g695 695
5 7852287 7853290 + Vvi5g696 Vvi5g696 696
5 7860395 7886932 - Vvi5g697 Vvi5g697 697
5 7893717 7899140 + Vvi5g698 Vvi5g698 698
       

DecoBrowse