Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g836 . . . . Bpe12g00672 . . . . Cmo18g00157 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo13g00149 . . . . . . Bma08g00079 . . . . Cma18g00195 . Car18g00188 Cpe09g00999 . . . . . . . . Cla01g01348 Cam01g1383 Cec01g1411 Cco01g1508 Clacu01g1414 Cmu01g1317 Cre01g1225 . . . .
Vvi17g837 Blo04g00715 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone2ag0934 Cone16ag0069 . . . . . . . . Bda11g01647 Bda14g00793 . Bpe15g00656 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g838 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g839 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g840 Blo04g00714 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone2ag0935 Cone16ag0068 . . Lsi02g00420 . Chy12g01234 Cme12g01657 . . . Bda14g00792 . Bpe15g00657 . . . . . . . . Car18g00189 Cpe09g00998 . Bhi08g01668 Tan05g1957 . Lac10g0498 . . . Cla03g00291 Cam03g0309 Cec03g0304 Cco03g0317 Clacu03g0310 Cmu03g0920 Cre03g0611 . . . .
Vvi17g841 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g842 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g843 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g844 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g845 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 2049 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
11 50510345 50511349 - Bda008538.1 Bda11g01647 1647
14 6131916 6134294 + Bda027561.1 Bda14g00792 792
14 6135401 6136330 - Bda027562.1 Bda14g00793 793
8 46875966 46881648 - XM_039037818.1 Bhi08g01668 1668
4 6584818 6587543 + BLOR13626 Blo04g00714 714
4 6588280 6589209 - BLOR13627 Blo04g00715 715
13 4735728 4739467 - BLOR05430 Blo13g00149 149
8 966886 968386 + Bma027078.1 Bma08g00079 79
12 12378225 12379580 - Bpe024904 Bpe12g00672 672
15 17297171 17298100 + Bpe001589.1 Bpe15g00656 656
15 17299293 17301632 - Bpe001590.1 Bpe15g00657 657
1 27139976 27141996 - CaPI482276_01g013830.1 Cam01g1383 1383
3 4326935 4332365 - CaPI482276_03g003090.1 Cam03g0309 309
18 1032658 1034753 - Carg06755-RA Car18g00188 188
18 1036687 1040988 - Carg06756-RA Car18g00189 189
1 27074273 27076280 + CcPI632755_01g015080.1 Cco01g1508 1508
3 3535829 3540067 - CcPI632755_03g003170.1 Cco03g0317 317
1 28542099 28544085 - CePI673135_01g014110.1 Cec01g1411 1411
3 3463407 3467575 - CePI673135_03g003040.1 Cec03g0304 304
12 17043519 17045305 + Chy12G218340.1 Chy12g01234 1234
1 25645489 25649848 + ClG42_01g0141400.10 Clacu01g1414 1414
3 3624525 3628726 - ClG42_03g0031000.10 Clacu03g0310 310
1 27015307 27018823 + ClCG01G013653.1 Cla01g01348 1348
3 3560330 3571156 - ClCG03G003040.2 Cla03g00291 291
18 1013825 1023312 - CmaCh18G001950.1 Cma18g00195 195
12 23627732 23632063 + MELO3C002304.2.1 Cme12g01657 1657
18 1086006 1094708 - CmoCh18G001570.1 Cmo18g00157 157
1 25988752 25993113 + CmPI595203_01g013170.1 Cmu01g1317 1317
3 3866602 3870789 - CmPI595203_03g009200.1 Cmu03g0920 920
2 35084343 35085293 + Conep02aG0196800.1 Cone2ag0934 934
2 35085925 35089234 - Conep02aG0196900.1 Cone2ag0935 935
16 343726 344925 + Conep16aG0006900.1 Cone16ag0068 68
16 345616 346563 - Conep16aG0007000.1 Cone16ag0069 69
9 8866244 8869255 + Cp4.1LG09g10020.1 Cpe09g00998 998
9 8870202 8873615 + Cp4.1LG09g10040.1 Cpe09g00999 999
1 25154199 25156372 - CrPI670011_01g012250.1 Cre01g1225 1225
3 5033540 5039012 - CrPI670011_03g006110.1 Cre03g0611 611
10 3819537 3825456 - Lag0024543.1 Lac10g0498 498
2 3486985 3488929 - Lsi02G004200.1 Lsi02g00420 420
5 69186223 69193891 + Tan0015821.2 Tan05g1957 1957
17 10982627 10987091 - Vvi17g836 Vvi17g836 836
17 11011842 11013532 + Vvi17g837 Vvi17g837 837
17 11013563 11013698 - Vvi17g838 Vvi17g838 838
17 11014105 11015622 - Vvi17g839 Vvi17g839 839
17 11017885 11022885 - Vvi17g840 Vvi17g840 840
17 11102024 11102394 - Vvi17g841 Vvi17g841 841
17 11102564 11103601 + Vvi17g842 Vvi17g842 842
17 11103649 11105095 - Vvi17g843 Vvi17g843 843
17 11111213 11112253 - Vvi17g844 Vvi17g844 844
17 11122704 11124249 + Vvi17g845 Vvi17g845 845
       

DecoBrowse