Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1630 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1631 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1632 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1633 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1634 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1635 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1202 . . . . . . . . . Bda11g00940 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1636 . . . . . . . . . . Cma01g00836 . Car01g00775 . . Cpe06g01012 . . . . . . . . Cla08g00040 Cam08g0039 Cec08g0213 Cco08g0092 Clacu08g0055 Cmu08g0053 Cre08g0043 . . . . . . . Cme09g00023 . . . . . . . . Sed06g0856 Cmo01g00876 Cmo09g01322 . . . Car09g01152 . Cpe02g01023 Bhi06g00240 Tan10g2040 Cmetu09g0728 . Hepe02g3268 . Lcy10g2140 . . . . . . . Lsi08g00030 . . .
Vvi18g1637 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1183 Cone7ag0947 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1638 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1639 . . . . . . . . . . Cma01g00837 . Car01g00776 . . . . . . . . . . . Cla08g00042 Cam08g0041 Cec08g0211 Cco08g0096 Clacu08g0058 Cmu08g0056 Cre08g0046 . . . . . . . . . . . . . . . . . Cmo01g00877 . . . . . . Cpe02g01021 Bhi06g00234 . . . . . . . . . . . . . Lsi08g00034 . . .
   
Previous Page 2229 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
11 9195821 9199962 - Bda005698.2 Bda11g00940 940
6 5559007 5571205 + XM_039033674.1 Bhi06g00234 234
6 5659781 5664319 - XM_039035219.1 Bhi06g00240 240
8 911991 915646 + CaPI482276_08g000390.1 Cam08g0039 39
8 947872 956093 - CaPI482276_08g000410.1 Cam08g0041 41
1 4757030 4759772 + Carg21722-RA Car01g00775 775
1 4759735 4770198 - Carg21723-RA Car01g00776 776
9 12133159 12135910 - Carg27174-RA Car09g01152 1152
8 1522688 1526361 + CcPI632755_08g000920.1 Cco08g0092 92
8 1584628 1592148 - CcPI632755_08g000960.1 Cco08g0096 96
8 3858851 3870644 + CePI673135_08g002110.1 Cec08g0211 211
8 3926357 3930030 - CePI673135_08g002130.1 Cec08g0213 213
8 1323900 1327555 + ClG42_08g0005500.10 Clacu08g0055 55
8 1344694 1356148 - ClG42_08g0005800.10 Clacu08g0058 58
8 1155396 1159712 + ClCG08G000390.1 Cla08g00040 40
8 1179583 1189210 - ClCG08G000410.2 Cla08g00042 42
1 4565483 4572993 + CmaCh01G008360.1 Cma01g00836 836
1 4573034 4583901 - CmaCh01G008370.1 Cma01g00837 837
9 223228 227875 + MELO3C022211.2.1 Cme09g00023 23
9 21652988 21657829 - PI0028182.1 Cmetu09g0728 728
1 4759147 4761848 + CmoCh01G008760.1 Cmo01g00876 876
1 4761861 4772193 - CmoCh01G008770.1 Cmo01g00877 877
9 11950989 11954038 - CmoCh09G013220.1 Cmo09g01322 1322
8 1242419 1246074 + CmPI595203_08g000530.1 Cmu08g0053 53
8 1266397 1274649 - CmPI595203_08g000560.1 Cmu08g0056 56
4 10027601 10030136 + Conep04aG0122900.1 Cone4ag1183 1183
4 10104298 10107703 + Conep04aG0124800.1 Cone4ag1202 1202
7 7372504 7375076 - Conep07aG0097600.1 Cone7ag0947 947
2 9380290 9384804 + Cp4.1LG02g10680.1 Cpe02g01021 1021
2 9390538 9394618 - Cp4.1LG02g10640.1 Cpe02g01023 1023
6 10455004 10459182 - Cp4.1LG06g10130.1 Cpe06g01012 1012
8 1127862 1131528 + CrPI670011_08g000430.1 Cre08g0043 43
8 1162935 1171206 - CrPI670011_08g000460.1 Cre08g0046 46
2 82285235 82289426 - Hsped.02g32680.1 Hepe02g3268 3268
10 45421235 45426913 - Maker00039825 Lcy10g2140 2140
8 826071 830257 + Lsi08G000300.1 Lsi08g00030 30
8 849912 862269 - Lsi08G000340.1 Lsi08g00034 34
6 9623076 9626034 - Sed0016781.1 Sed06g0856 856
10 64678608 64683564 - Tan0017345.2 Tan10g2040 2040
18 26610909 26614456 + Vvi18g1630 Vvi18g1630 1630
18 26685497 26687218 + Vvi18g1631 Vvi18g1631 1631
18 26733760 26735477 + Vvi18g1632 Vvi18g1632 1632
18 26756040 26758590 - Vvi18g1633 Vvi18g1633 1633
18 26762451 26767772 - Vvi18g1634 Vvi18g1634 1634
18 26773221 26795516 - Vvi18g1635 Vvi18g1635 1635
18 26814786 26824073 + Vvi18g1636 Vvi18g1636 1636
18 26843050 26848844 + Vvi18g1637 Vvi18g1637 1637
18 26856806 26884582 + Vvi18g1638 Vvi18g1638 1638
18 26888676 26896544 - Vvi18g1639 Vvi18g1639 1639
       

DecoBrowse