Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1780 . Blo12g00807 . Bda03g00367 . Bpe04g00329 Bma04g00344 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1781 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1782 Blo01g01697 . . . . . . Bma01g02463 . . . . . . . Cpe06g00942 . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00907 . . . . . . . . . . . Car09g01069 . . . . . . . . . . . . . . . . . . . .
Vvi18g1783 . . . . . . . Bma01g02473 . . . Cma09g01208 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00190 . . .
Vvi18g1784 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1785 . . . . . . . . . . Cma01g00888 Cma09g01207 Car01g00811 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo01g00934 . . . . Car09g01068 . . . . . . . . . . . . . . . . . . . .
Vvi18g1786 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1167 Cone9ag1149 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1787 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1788 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1789 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 2244 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
3 3087919 3089589 + Bda016330.1 Bda03g00367 367
11 8902532 8903232 - Bda005661.1 Bda11g00907 907
1 56645708 56646512 + BLOR01697 Blo01g01697 1697
12 26438009 26439664 - BLOR04826 Blo12g00807 807
1 82190166 82190883 + Bma003333.1 Bma01g02463 2463
1 82386756 82387467 + Bma003346.1 Bma01g02473 2473
4 2799620 2801287 + Bma018803.1 Bma04g00344 344
4 2099620 2101287 + Bpe015025.1 Bpe04g00329 329
1 5455679 5465242 + Carg27121-RA Car01g00811 811
9 9611194 9613141 - Carg26417-RA Car09g01068 1068
9 9653894 9656407 + Carg27923-RA Car09g01069 1069
1 5111973 5121760 + CmaCh01G008880.1 Cma01g00888 888
9 7957753 7971445 + CmaCh09G012070.1 Cma09g01207 1207
9 7971442 7974473 - CmaCh09G012080.1 Cma09g01208 1208
1 5382731 5392535 + CmoCh01G009340.1 Cmo01g00934 934
6 8934592 8940705 - Conep06aG0121200.1 Cone6ag1167 1167
9 8143271 8149378 + Conep09aG0118100.1 Cone9ag1149 1149
6 7702881 7706499 + Cp4.1LG06g09780.1 Cpe06g00942 942
8 4022600 4024856 - Lsi08G001900.1 Lsi08g00190 190
18 29086518 29097009 + Vvi18g1780 Vvi18g1780 1780
18 29102286 29103639 - Vvi18g1781 Vvi18g1781 1781
18 29105343 29106206 + Vvi18g1782 Vvi18g1782 1782
18 29107955 29111539 + Vvi18g1783 Vvi18g1783 1783
18 29115651 29117874 + Vvi18g1784 Vvi18g1784 1784
18 29118291 29129881 - Vvi18g1785 Vvi18g1785 1785
18 29155210 29158436 + Vvi18g1786 Vvi18g1786 1786
18 29194470 29198645 + Vvi18g1787 Vvi18g1787 1787
18 29199120 29199682 - Vvi18g1788 Vvi18g1788 1788
18 29203049 29240693 + Vvi18g1789 Vvi18g1789 1789
       

DecoBrowse