Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g912 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g913 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g914 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0592 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g915 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g916 Blo02g01165 . . Bda08g00449 Bpe05g00711 Bpe07g00055 . . . Cmo16g00572 . . . . . Cpe14g00444 . . . . . . . . . . . . . . . . . Cone6ag0873 Cone9ag0879 . . . . . . . . . . Bma05g00893 . . . . . Cma16g00523 . . Cpe01g00525 . . . . . . . . . . . . . . . . Csa04g00688 . .
Vvi2g917 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g918 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cpe01g00526 . . . . . . . . . . . . . . . . Csa04g00690 . .
Vvi2g919 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g920 Blo02g01166 . . . Bpe05g00712 . . . . Cmo16g00571 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cpe01g00527 . . . . . . . . . . . . . . . . . . .
Vvi2g921 Blo02g01167 . . Bda08g00448 . Bpe07g00054 . . . . . . . . . . Cpe02g00591 . . . . . . . . . . . . . . . . Cone6ag0874 Cone9ag0880 . . . . . . . . . . Bma05g00895 Bma12g00624 . . . . . . . Cpe01g00528 Cpe06g00589 . . . . . . . . . . . . . . . Csa04g00692 . .
   
Previous Page 232 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
8 4605115 4608509 - Bda024898.1 Bda08g00448 448
8 4626048 4626985 + Bda024899.1 Bda08g00449 449
2 43306735 43310692 - BLOR10895 Blo02g01165 1165
2 43321903 43322593 - BLOR10896 Blo02g01166 1166
2 43324372 43330660 + BLOR10897 Blo02g01167 1167
5 46723429 46724368 - Bma022011.1 Bma05g00893 893
5 46755243 46758664 + Bma022013.1 Bma05g00895 895
12 27486608 27489555 + Bma007800.1 Bma12g00624 624
5 20668337 20669572 - Bpe018124.1 Bpe05g00711 711
5 20671858 20672617 - Bpe018125.1 Bpe05g00712 712
7 448664 452465 - Bpe020866.1 Bpe07g00054 54
7 455035 456242 + Bpe020867.1 Bpe07g00055 55
16 2669285 2675145 + CmaCh16G005230.1 Cma16g00523 523
16 2765195 2767499 + CmoCh16G005710.1 Cmo16g00571 571
16 2768399 2770613 + CmoCh16G005720.1 Cmo16g00572 572
6 4462870 4465275 - Conep06aG0090000.1 Cone6ag0873 873
6 4465526 4470261 + Conep06aG0090100.1 Cone6ag0874 874
9 4288560 4290928 - Conep09aG0090100.1 Cone9ag0879 879
9 4293527 4298372 + Conep09aG0090200.1 Cone9ag0880 880
12 5149464 5177313 - Conep12aG0061300.1 Cone12ag0592 592
1 3019802 3023380 - Cp4.1LG01g01280.1 Cpe01g00525 525
1 3024161 3028506 + Cp4.1LG01g01360.1 Cpe01g00526 526
1 3026445 3030758 - Cp4.1LG01g01290.1 Cpe01g00527 527
1 3031762 3039916 - Cp4.1LG01g01320.1 Cpe01g00528 528
2 3536733 3545929 - Cp4.1LG02g02730.1 Cpe02g00591 591
6 3606362 3613311 + Cp4.1LG06g05910.1 Cpe06g00589 589
14 2766992 2769553 + Cp4.1LG14g02720.1 Cpe14g00444 444
4 4685014 4688490 - CsaV3_4G006880.1 Csa04g00688 688
4 4691367 4693675 + CsaV3_4G006900.1 Csa04g00690 690
4 4698595 4707936 - CsaV3_4G006920.1 Csa04g00692 692
2 17095511 17133614 - Vvi2g912 Vvi2g912 912
2 17133922 17139229 - Vvi2g913 Vvi2g913 913
2 17148050 17187066 - Vvi2g914 Vvi2g914 914
2 17196381 17198277 - Vvi2g915 Vvi2g915 915
2 17221574 17235993 - Vvi2g916 Vvi2g916 916
2 17263496 17294017 + Vvi2g917 Vvi2g917 917
2 17306170 17309205 + Vvi2g918 Vvi2g918 918
2 17315633 17315882 - Vvi2g919 Vvi2g919 919
2 17315923 17324687 - Vvi2g920 Vvi2g920 920
2 17330097 17381317 + Vvi2g921 Vvi2g921 921
       

DecoBrowse