Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1181 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1182 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g01355 Cam11g1413 Cec11g1439 Cco11g1437 Clacu11g1570 Cmu11g1390 Cre11g1811 . . . .
Vvi1g1183 . . . . . . . . . . . . . . . . . Bhi07g01899 Tan04g0078 Cmetu10g0910 Lac13g0068 Hepe10g1530 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1184 Blo01g00365 Blo16g01194 . . . Bpe10g00785 . Bma15g00238 Cmo04g01920 Cmo18g00698 . Cma18g00710 . Car18g00655 Sed06g1738 Cpe09g00579 Cpe01g01608 Bhi07g01900 Tan04g0075 Cmetu10g0234 Lac13g0067 Hepe10g0096 . . . . . . . . . Cone13ag1136 Cone19ag1117 Cone8ag0740 . Lsi04g00666 . . Cme10g00643 Blo06g00829 . . . . . Bma01g00018 Bma06g00574 . . . Cma04g01823 . Car04g01836 . . . . . . . . . . Cla11g01354 Cam11g1412 Cec11g1438 Cco11g1436 Clacu11g1569 Cmu11g1389 Cre11g1810 . . . .
Vvi1g1185 Blo01g00364 Blo16g01195 Bda01g02184 . Bpe13g00527 . . . . Cmo18g00697 . Cma18g00708 . Car18g00654 . Cpe09g00580 . . . . . . . . . . . . . . . . . Cone8ag0741 . . . . Cme10g00645 . . . . . . Bma01g00017 . . . . . . . . . . . . . . . . . Cla11g01353 Cam11g1411 Cec11g1437 Cco11g1432 Clacu11g1568 Cmu11g1388 Cre11g1809 . . . .
Vvi1g1186 . Blo16g01197 . . . . Bma14g01908 Bma15g00237 Cmo04g01922 Cmo18g00696 . Cma18g00707 . Car18g00653 . Cpe09g00581 Cpe01g01609 Bhi07g01901 . . . . . . . . . . . . . Cone13ag1137 Cone19ag1118 . . Lsi04g00668 . . Cme10g00646 Blo06g00830 . . . . . . . . . . Cma04g01825 . Car04g01838 . . . . . . . . . . Cla11g01352 . . . . . . . . . .
Vvi1g1187 . . . . . . Bma14g01934 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1188 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1189 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1190 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 119 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
1 57821145 57823014 - Bda004526.1 Bda01g02184 2184
7 50946377 50950160 + XM_039037032.1 Bhi07g01899 1899
7 50951887 50957297 - XM_039036628.1 Bhi07g01900 1900
7 51074840 51079866 + XM_039037026.1 Bhi07g01901 1901
1 4278481 4280311 - BLOR00364 Blo01g00364 364
1 4283069 4291508 + BLOR00365 Blo01g00365 365
6 31531339 31534327 - BLOR17412 Blo06g00829 829
6 31541737 31543907 + BLOR17413 Blo06g00830 830
16 40439448 40443444 - BLOR21981 Blo16g01194 1194
16 40448112 40450003 + BLOR21982 Blo16g01195 1195
16 40478405 40484483 - BLOR21984 Blo16g01197 1197
1 306541 308387 - Bma000188.1 Bma01g00017 17
1 310878 314809 + Bma000189.1 Bma01g00018 18
6 30839405 30842668 - Bma023489.1 Bma06g00574 574
14 40794714 40796341 + Bma012695.1 Bma14g01908 1908
14 41278758 41279315 + Bma012727.1 Bma14g01934 1934
15 2369232 2371408 - Bma013223.1 Bma15g00237 237
15 2376515 2390973 + Bma013224.1 Bma15g00238 238
10 14013626 14016585 - Bpe003091.1 Bpe10g00785 785
13 12555642 12557508 + Bpe010232.1 Bpe13g00527 527
11 26782092 26785766 - CaPI482276_11g014110.1 Cam11g1411 1411
11 26804562 26808551 + CaPI482276_11g014120.1 Cam11g1412 1412
11 26810129 26812581 - CaPI482276_11g014130.1 Cam11g1413 1413
4 10633185 10638403 - Carg14269-RA Car04g01836 1836
4 10650596 10654544 + Carg14267-RA Car04g01838 1838
18 7798146 7802196 - Carg21236-RA Car18g00653 653
18 7805671 7809961 - Carg21237-RA Car18g00654 654
18 7816975 7820350 + Carg21238-RA Car18g00655 655
11 27083944 27086719 - CcPI632755_11g014320.1 Cco11g1432 1432
11 27123540 27127515 + CcPI632755_11g014360.1 Cco11g1436 1436
11 27129170 27132122 - CcPI632755_11g014370.1 Cco11g1437 1437
11 28530445 28534188 - CePI673135_11g014370.1 Cec11g1437 1437
11 28553272 28557258 + CePI673135_11g014380.1 Cec11g1438 1438
11 28558928 28561691 - CePI673135_11g014390.1 Cec11g1439 1439
11 26807701 26811458 - ClG42_11g0156800.10 Clacu11g1568 1568
11 26829994 26833971 + ClG42_11g0156900.10 Clacu11g1569 1569
11 26835551 26837991 - ClG42_11g0157000.10 Clacu11g1570 1570
11 26999967 27005017 - ClCG11G013800.1 Cla11g01352 1352
11 27010818 27014769 - ClCG11G013810.1 Cla11g01353 1353
11 27032664 27037284 + ClCG11G013820.2 Cla11g01354 1354
11 27038864 27041304 - ClCG11G013830.1 Cla11g01355 1355
4 9191434 9196680 - CmaCh04G018230.1 Cma04g01823 1823
4 9208413 9212245 + CmaCh04G018250.1 Cma04g01825 1825
18 6442392 6446476 - CmaCh18G007070.1 Cma18g00707 707
18 6450457 6454540 - CmaCh18G007080.1 Cma18g00708 708
18 6460697 6464991 + CmaCh18G007100.1 Cma18g00710 710
10 4098358 4103398 - MELO3C011882.2.1 Cme10g00643 643
10 4114431 4115713 + MELO3C011880.2.1 Cme10g00645 645
10 4122792 4126934 + MELO3C011879.2.1 Cme10g00646 646
10 17835446 17839381 + PI0000307.1 Cmetu10g0234 234
10 17839898 17840380 - PI0005922.1 Cmetu10g0910 910
4 9795617 9800853 - CmoCh04G019200.1 Cmo04g01920 1920
4 9813402 9817271 + CmoCh04G019220.1 Cmo04g01922 1922
18 8827292 8831710 - CmoCh18G006960.1 Cmo18g00696 696
18 8835344 8839357 - CmoCh18G006970.1 Cmo18g00697 697
18 8845107 8850981 + CmoCh18G006980.1 Cmo18g00698 698
11 26049690 26063554 - CmPI595203_11g013880.1 Cmu11g1388 1388
11 26082089 26086066 + CmPI595203_11g013890.1 Cmu11g1389 1389
11 26087646 26090087 - CmPI595203_11g013900.1 Cmu11g1390 1390
8 7457912 7461713 - Conep08aG0076500.1 Cone8ag0740 740
8 7478069 7481550 + Conep08aG0076600.1 Cone8ag0741 741
13 9000613 9004712 - Conep13aG0116800.1 Cone13ag1136 1136
13 9007123 9012886 + Conep13aG0116900.1 Cone13ag1137 1137
19 8027342 8031518 - Conep19aG0115100.1 Cone19ag1117 1117
19 8033697 8036568 + Conep19aG0115200.1 Cone19ag1118 1118
1 9816481 9821633 - Cp4.1LG01g16070.1 Cpe01g01608 1608
1 9834323 9838364 + Cp4.1LG01g15960.1 Cpe01g01609 1609
9 4001540 4006834 - Cp4.1LG09g05970.1 Cpe09g00579 579
9 4012482 4016573 + Cp4.1LG09g06030.1 Cpe09g00580 580
9 4019405 4024199 + Cp4.1LG09g06010.1 Cpe09g00581 581
11 29680587 29681455 - CrPI670011_11g018090.1 Cre11g1809 1809
11 29702577 29706584 + CrPI670011_11g018100.1 Cre11g1810 1810
11 29707328 29710345 - CrPI670011_11g018110.1 Cre11g1811 1811
10 891512 896948 - Hsped.10g00960.1 Hepe10g0096 96
10 52046606 52049430 - Hsped.10g15300.1 Hepe10g1530 1530
13 491820 496375 + Lag0039863.1 Lac13g0067 67
13 497139 498698 - Lag0039864.1 Lac13g0068 68
4 6078552 6083307 - Lsi04G006660.1 Lsi04g00666 666
4 6110513 6119608 + Lsi04G006680.1 Lsi04g00668 668
6 42045814 42051496 - Sed0019604.1 Sed06g1738 1738
4 570901 576634 + Tan0005986.2 Tan04g0075 75
4 577216 579218 - Tan0002653.1 Tan04g0078 78
1 19893129 19896199 + Vvi1g1181 Vvi1g1181 1181
1 19913048 19914939 + Vvi1g1182 Vvi1g1182 1182
1 19921836 19923437 + Vvi1g1183 Vvi1g1183 1183
1 19925331 19930565 - Vvi1g1184 Vvi1g1184 1184
1 19942745 19949762 + Vvi1g1185 Vvi1g1185 1185
1 19953544 19957705 + Vvi1g1186 Vvi1g1186 1186
1 19997291 20000950 + Vvi1g1187 Vvi1g1187 1187
1 20003390 20003813 + Vvi1g1188 Vvi1g1188 1188
1 20007760 20013929 + Vvi1g1189 Vvi1g1189 1189
1 20019342 20022287 + Vvi1g1190 Vvi1g1190 1190
       

DecoBrowse