Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g656 . . . . . Bpe13g00311 Bma06g00153 . Cmo13g01122 . . . . Car11g00185 Sed08g0274 Cpe20g00072 Cpe04g01461 Bhi02g00096 Tan09g2045 Cmetu02g1859 . Hepe09g0272 . . Cla06g01540 Cam06g1699 Cec06g1761 Cco06g1760 Clacu06g1666 Cmu06g1612 Cre06g2425 . . Cone13ag0036 Cone19ag0045 . Csa01g00597 Chy12g01501 Cme12g01945 . . Bda11g01722 Bda14g00878 . Bpe15g00582 . . Sed01g2298 . Cmo11g00210 Cma13g01076 . Car13g00912 . . Cpe18g00705 Bhi08g01086 Tan05g2364 Cmetu12g0950 Lac10g0146 Hepe07g2466 . . Cla04g01156 Cam04g1214 Cec01g1725 Cco01g1770 Clacu04g1241 Cmu04g1220 Cre01g1516 Lsi06g01413 Csa01g00293 . Cme02g01830
Vvi17g657 Blo04g00789 Blo16g00169 Bda06g00522 Bda15g00622 . Bpe13g00312 Bma06g00152 Bma12g00965 Cmo13g01121 . . . . . Sed08g0275 Cpe20g00073 Cpe04g01460 Bhi02g00095 Tan09g2044 Cmetu02g1487 . Hepe09g0273 . . Cla06g01539 Cam06g1698 Cec06g1760 Cco06g1759 Clacu06g1665 Cmu06g1611 Cre06g2424 Cone2ag0802 Cone16ag0207 Cone13ag0035 Cone19ag0044 Lsi02g00118 Csa01g00598 Chy12g01500 Cme12g01944 . Blo15g00338 Bda11g01723 Bda14g00879 Bpe07g00756 Bpe15g00581 Bma03g00850 . Sed08g2119 . Cmo11g00211 Cma13g01075 . Car13g00911 Car18g00005 . Cpe18g00707 Bhi08g01085 Tan05g2363 Cmetu12g0852 Lac10g0147 Hepe07g2465 . . Cla04g01155 Cam04g1213 Cec01g1724 Cco01g1769 Clacu04g1240 Cmu04g1219 Cre01g1515 Lsi06g01412 Csa01g00294 Chy02g02442 Cme02g01829
Vvi17g658 Blo04g00790 Blo16g00168 . . . . Bma06g00150 . . . . . . . . . . . . . . . . . . . . . . . . Cone2ag0801 . . . . . . . . . . Bda14g00881 . Bpe15g00580 Bma03g00851 . . . . . . . Car18g00004 . . . . . . . . . . . . . . . . . . . .
Vvi17g659 . . . Bda15g00670 . Bpe13g00204 Bma06g00256 . Cmo13g01120 . . Cma11g00035 . . . Cpe20g00075 . . . . . . . . . . . . . . . . . . . Lsi02g00119 Csa01g00599 Chy12g01498 Cme12g01942 . . Bda11g01727 Bda14g00880 . . . . Sed08g2120 . . Cma13g01074 . Car13g00910 . . . Bhi08g01084 Tan05g2361 Cmetu12g0690 Lac10g0148 Hepe07g2463 . . Cla04g01154 Cam04g1212 Cec01g1723 Cco01g1768 Clacu04g1239 Cmu04g1218 Cre01g1514 . . . .
Vvi17g660 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g661 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g662 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g663 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g664 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g665 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 2031 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
6 7485926 7487557 + Bda023777.1 Bda06g00522 522
11 51684235 51687045 + Bda008619.1 Bda11g01722 1722
11 51688250 51689835 - Bda008620.1 Bda11g01723 1723
11 51808233 51810128 + Bda008624.1 Bda11g01727 1727
14 6804130 6806224 + Bda027656.1 Bda14g00878 878
14 6806648 6808090 - Bda027657.1 Bda14g00879 879
14 6809627 6811386 + Bda027658.1 Bda14g00880 880
14 6811684 6812925 - Bda027659.1 Bda14g00881 881
15 9386566 9388142 - Bda012466.2 Bda15g00622 622
15 10171818 10173770 - Bda012521.1 Bda15g00670 670
2 1807980 1811204 + XM_039022804.1 Bhi02g00095 95
2 1811447 1816079 - XM_039022803.1 Bhi02g00096 96
8 35047112 35050044 - XM_039038038.1 Bhi08g01084 1084
8 35071874 35074010 + XM_039039397.1 Bhi08g01085 1085
8 35074596 35077749 - XM_039039396.1 Bhi08g01086 1086
4 7896920 7903343 - BLOR13701 Blo04g00789 789
4 7927845 7929167 - BLOR13702 Blo04g00790 790
15 4070928 4072570 - BLOR06732 Blo15g00338 338
16 3796605 3797852 + BLOR07416 Blo16g00168 168
16 3800525 3805688 + BLOR07417 Blo16g00169 169
3 8185672 8187106 - Bma017166.1 Bma03g00850 850
3 8198944 8200185 - Bma017167.1 Bma03g00851 851
6 1954364 1955593 + Bma022769.1 Bma06g00150 150
6 1961433 1963610 + Bma022771.1 Bma06g00152 152
6 1964628 1967438 - Bma022772.1 Bma06g00153 153
6 3506836 3508785 - Bma022887.1 Bma06g00256 256
12 41633588 41635276 + Bma008307.1 Bma12g00965 965
7 14085270 14086866 + Bpe021602.1 Bpe07g00756 756
13 10055728 10057677 + Bpe006326.1 Bpe13g00204 204
13 10982497 10985303 + Bpe006438.1 Bpe13g00311 311
13 10986507 10987989 - Bpe006439.1 Bpe13g00312 312
15 16766033 16767358 + Bpe001513.1 Bpe15g00580 580
15 16771819 16773173 + Bpe001514.1 Bpe15g00581 581
15 16773587 16775622 - Bpe001515.1 Bpe15g00582 582
4 26155714 26157630 - CaPI482276_04g012120.1 Cam04g1212 1212
4 26162397 26164332 + CaPI482276_04g012130.1 Cam04g1213 1213
4 26165359 26168253 - CaPI482276_04g012140.1 Cam04g1214 1214
6 28366249 28370906 + CaPI482276_06g016980.1 Cam06g1698 1698
6 28372185 28375664 - CaPI482276_06g016990.1 Cam06g1699 1699
11 1069342 1072894 + Carg09204-RA Car11g00185 185
13 9418793 9420709 - Carg04761-RA Car13g00910 910
13 9422270 9424126 + Carg04760-RA Car13g00911 911
13 9424582 9426697 - Carg04759-RA Car13g00912 912
18 16181 17482 + Carg22782-RA Car18g00004 4
18 18632 20557 + Carg22781-RA Car18g00005 5
1 30406935 30408851 - CcPI632755_01g017680.1 Cco01g1768 1768
1 30413566 30415502 + CcPI632755_01g017690.1 Cco01g1769 1769
1 30416105 30419417 - CcPI632755_01g017700.1 Cco01g1770 1770
6 28069321 28074755 + CcPI632755_06g017590.1 Cco06g1759 1759
6 28076145 28080220 - CcPI632755_06g017600.1 Cco06g1760 1760
1 31834167 31836083 - CePI673135_01g017230.1 Cec01g1723 1723
1 31840762 31842155 + CePI673135_01g017240.1 Cec01g1724 1724
1 31843163 31846120 - CePI673135_01g017250.1 Cec01g1725 1725
6 31129068 31135142 + CePI673135_06g017600.1 Cec06g1760 1760
6 31136472 31140867 - CePI673135_06g017610.1 Cec06g1761 1761
2 28066545 28068775 + Chy2G047090.1 Chy02g02442 2442
12 18822797 18824713 - Chy12G220980.1 Chy12g01498 1498
12 18831683 18832510 + Chy12G221000.1 Chy12g01500 1500
12 18833485 18835280 - Chy12G221010.1 Chy12g01501 1501
4 26505117 26507033 - ClG42_04g0123900.10 Clacu04g1239 1239
4 26511695 26513642 + ClG42_04g0124000.10 Clacu04g1240 1240
4 26514624 26517514 - ClG42_04g0124100.10 Clacu04g1241 1241
6 27425740 27429680 + ClG42_06g0166500.10 Clacu06g1665 1665
6 27430966 27434445 - ClG42_06g0166600.10 Clacu06g1666 1666
4 26743111 26746279 - ClCG04G011790.1 Cla04g01154 1154
4 26749906 26751853 + ClCG04G011800.2 Cla04g01155 1155
4 26752835 26755725 - ClCG04G011810.1 Cla04g01156 1156
6 28976360 28979302 + ClCG06G015620.2 Cla06g01539 1539
6 28980534 28984941 - ClCG06G015630.1 Cla06g01540 1540
11 162015 163964 + CmaCh11G000350.1 Cma11g00035 35
13 8116481 8119619 - CmaCh13G010740.1 Cma13g01074 1074
13 8119493 8122017 + CmaCh13G010750.1 Cma13g01075 1075
13 8122070 8124153 - CmaCh13G010760.1 Cma13g01076 1076
2 25023265 25026309 + MELO3C017226.2.1 Cme02g01829 1829
2 25026768 25031498 - MELO3C017225.2.1 Cme02g01830 1830
12 25362669 25366201 - MELO3C002031.2.1 Cme12g01942 1942
12 25371130 25372861 + MELO3C002029.2.1 Cme12g01944 1944
12 25373397 25375689 - MELO3C002028.2.1 Cme12g01945 1945
2 23336031 23340360 + PI0019451.1 Cmetu02g1487 1487
2 23341118 23344510 - PI0023616.1 Cmetu02g1859 1859
12 772581 775743 + PI0008456.2 Cmetu12g0690 690
12 765086 766950 - PI0000611.1 Cmetu12g0852 852
12 760624 762849 + PI0012404.1 Cmetu12g0950 950
11 1037215 1040797 + CmoCh11G002100.1 Cmo11g00210 210
11 1040686 1043512 - CmoCh11G002110.1 Cmo11g00211 211
13 9132537 9134483 - CmoCh13G011200.1 Cmo13g01120 1120
13 9135995 9137827 + CmoCh13G011210.1 Cmo13g01121 1121
13 9138433 9140428 - CmoCh13G011220.1 Cmo13g01122 1122
4 26687173 26689089 - CmPI595203_04g012180.1 Cmu04g1218 1218
4 26693682 26695629 + CmPI595203_04g012190.1 Cmu04g1219 1219
4 26696611 26699504 - CmPI595203_04g012200.1 Cmu04g1220 1220
6 27333706 27338647 + CmPI595203_06g016110.1 Cmu06g1611 1611
6 27339945 27343424 - CmPI595203_06g016120.1 Cmu06g1612 1612
2 34030542 34031888 + Conep02aG0182900.1 Cone2ag0801 801
2 34033054 34035877 + Conep02aG0183000.1 Cone2ag0802 802
13 219638 221746 + Conep13aG0003800.1 Cone13ag0035 35
13 222107 224475 - Conep13aG0003900.1 Cone13ag0036 36
16 1387062 1389755 + Conep16aG0021100.1 Cone16ag0207 207
19 289261 291503 + Conep19aG0004800.1 Cone19ag0044 44
19 291709 294133 - Conep19aG0004900.1 Cone19ag0045 45
4 11640731 11642468 + Cp4.1LG04g14580.1 Cpe04g01460 1460
4 11642038 11646415 - Cp4.1LG04g14600.1 Cpe04g01461 1461
18 6974938 6979983 + Cp4.1LG18g06960.1 Cpe18g00705 705
18 6979569 6982528 - Cp4.1LG18g07080.1 Cpe18g00707 707
20 389669 393100 + Cp4.1LG20g00740.1 Cpe20g00072 72
20 393735 395929 - Cp4.1LG20g00860.1 Cpe20g00073 73
20 397470 399416 + Cp4.1LG20g00770.1 Cpe20g00075 75
1 28353269 28355185 - CrPI670011_01g015140.1 Cre01g1514 1514
1 28360031 28361962 + CrPI670011_01g015150.1 Cre01g1515 1515
1 28362938 28365884 - CrPI670011_01g015160.1 Cre01g1516 1516
6 32130837 32134395 + CrPI670011_06g024240.1 Cre06g2424 2424
6 32135610 32139077 - CrPI670011_06g024250.1 Cre06g2425 2425
1 1837196 1840614 + CsaV3_1G002930.1 Csa01g00293 293
1 1841084 1844406 - CsaV3_1G002940.1 Csa01g00294 294
1 3844881 3846677 + CsaV3_1G005970.1 Csa01g00597 597
1 3847507 3849434 - CsaV3_1G005980.1 Csa01g00598 598
1 3854395 3858045 + CsaV3_1G005990.1 Csa01g00599 599
7 68943329 68946638 - Hsped.07g24630.1 Hepe07g2463 2463
7 68971435 68973360 + Hsped.07g24650.1 Hepe07g2465 2465
7 68974678 68977317 - Hsped.07g24660.1 Hepe07g2466 2466
9 2327360 2338230 + Hsped.09g02720.1 Hepe09g0272 272
9 2338861 2341674 - Hsped.09g02730.1 Hepe09g0273 273
10 1112644 1114781 + Lag0024191.1 Lac10g0146 146
10 1115330 1116409 - Lag0024192.1 Lac10g0147 147
10 1122317 1124230 + Lag0024193.1 Lac10g0148 148
2 977867 980024 - Lsi02G001180.1 Lsi02g00118 118
2 983187 986087 + Lsi02G001190.1 Lsi02g00119 119
6 24692045 24695306 + Lsi06G014120.1 Lsi06g01412 1412
6 24695337 24699948 - Lsi06G014130.1 Lsi06g01413 1413
1 17378783 17381135 - Sed0025785.1 Sed01g2298 2298
8 1600966 1604822 + Sed0002350.1 Sed08g0274 274
8 1605874 1608794 - Sed0017092.1 Sed08g0275 275
8 35173812 35176860 - Sed0015220.2 Sed08g2119 2119
8 35182356 35186070 + Sed0018848.1 Sed08g2120 2120
5 74963276 74966494 - Tan0004650.1 Tan05g2361 2361
5 74980524 74982876 + Tan0010421.2 Tan05g2363 2363
5 74983708 74986539 - Tan0009840.1 Tan05g2364 2364
9 70948428 70951709 + Tan0000074.1 Tan09g2044 2044
9 70952800 70957529 - Tan0010628.1 Tan09g2045 2045
17 8187655 8195243 + Vvi17g656 Vvi17g656 656
17 8195927 8201207 - Vvi17g657 Vvi17g657 657
17 8207769 8209333 + Vvi17g658 Vvi17g658 658
17 8213728 8215907 - Vvi17g659 Vvi17g659 659
17 8239659 8241675 + Vvi17g660 Vvi17g660 660
17 8299159 8313462 + Vvi17g661 Vvi17g661 661
17 8313491 8334526 + Vvi17g662 Vvi17g662 662
17 8334541 8340204 + Vvi17g663 Vvi17g663 663
17 8359460 8366696 - Vvi17g664 Vvi17g664 664
17 8367184 8369444 + Vvi17g665 Vvi17g665 665
       

DecoBrowse