Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1410 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1411 . . . Bda03g00370 . Bpe04g00333 Bma04g00348 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo01g00995 . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1412 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1413 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1414 . . . . . . . . . . . . . . . . . Bhi04g02523 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00782 Cam11g0814 Cec11g0796 Cco11g0801 Clacu11g1042 Cmu11g0903 Cre11g1258 . . . .
Vvi18g1415 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1416 . . . . . . . . . . . . . . Sed03g0682 . . Bhi04g02522 Tan11g0064 Cmetu03g0684 . Hepe02g3453 . Lcy10g2344 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1417 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1418 . . . . . . . . . . . . . . Sed03g0679 . . Bhi04g02520 Tan11g0067 Cmetu03g1551 . Hepe02g3451 . Lcy10g2342 . . . . . . . . . . . . . . . Blo17g00153 . . Bda13g01444 . Bpe14g00411 . Bma02g00188 . . . . . . . . . . . . . . . . Cla11g00778 Cam11g0812 Cec11g0793 Cco11g0799 Clacu11g1046 Cmu11g0907 Cre11g1256 . . . .
Vvi18g1419 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 2207 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
3 3107052 3118383 + Bda016333.1 Bda03g00370 370
13 37166883 37172899 - Bda000277.1 Bda13g01444 1444
4 67953973 67960343 - XM_039028650.1 Bhi04g02520 2520
4 68049549 68059661 - XM_039029128.1 Bhi04g02522 2522
4 68050406 68053579 + XM_039029130.1 Bhi04g02523 2523
17 1433382 1440114 - BLOR15974 Blo17g00153 153
2 1731338 1737364 - Bma014645.1 Bma02g00188 188
4 2820678 2834534 + Bma018807.1 Bma04g00348 348
4 2118146 2127532 + Bpe015029.2 Bpe04g00333 333
14 3829511 3835530 + Bpe007064.1 Bpe14g00411 411
11 10288490 10294599 - CaPI482276_11g008120.1 Cam11g0812 812
11 10393993 10396032 + CaPI482276_11g008140.1 Cam11g0814 814
11 9122185 9128268 - CcPI632755_11g007990.1 Cco11g0799 799
11 9225496 9227583 + CcPI632755_11g008010.1 Cco11g0801 801
11 9340756 9346806 - CePI673135_11g007930.1 Cec11g0793 793
11 9445005 9447086 + CePI673135_11g007960.1 Cec11g0796 796
11 12888394 12890433 - ClG42_11g0104200.10 Clacu11g1042 1042
11 13000074 13006138 + ClG42_11g0104600.10 Clacu11g1046 1046
11 11174851 11181565 - ClCG11G008140.1 Cla11g00778 778
11 11300738 11302777 + ClCG11G008180.2 Cla11g00782 782
3 25957756 25965546 - PI0027125.1 Cmetu03g0684 684
3 25945158 25951942 - PI0023821.2 Cmetu03g1551 1551
1 6886759 6899742 + CmoCh01G009950.1 Cmo01g00995 995
11 12217453 12219492 - CmPI595203_11g009030.1 Cmu11g0903 903
11 12329178 12335239 + CmPI595203_11g009070.1 Cmu11g0907 907
11 10946195 10952306 - CrPI670011_11g012560.1 Cre11g1256 1256
11 11077484 11079589 + CrPI670011_11g012580.1 Cre11g1258 1258
2 83859630 83866479 - Hsped.02g34510.1 Hepe02g3451 3451
2 83873080 83877267 - Hsped.02g34530.1 Hepe02g3453 3453
10 46999549 47006158 - Maker00039759 Lcy10g2342 2342
10 47010819 47014195 - Maker00039724 Lcy10g2344 2344
3 4089030 4095751 - Sed0013995.3 Sed03g0679 679
3 4100629 4103014 - Sed0026932.1 Sed03g0682 682
11 859774 862069 + Tan0001674.1 Tan11g0064 64
11 868868 875340 + Tan0008999.1 Tan11g0067 67
18 20616880 20617809 - Vvi18g1410 Vvi18g1410 1410
18 20619962 20633483 - Vvi18g1411 Vvi18g1411 1411
18 20663924 20667249 - Vvi18g1412 Vvi18g1412 1412
18 20712863 20713579 + Vvi18g1413 Vvi18g1413 1413
18 20718814 20720279 + Vvi18g1414 Vvi18g1414 1414
18 20720303 20720676 - Vvi18g1415 Vvi18g1415 1415
18 20728899 20735286 - Vvi18g1416 Vvi18g1416 1416
18 20741428 20743521 + Vvi18g1417 Vvi18g1417 1417
18 20755695 20776002 - Vvi18g1418 Vvi18g1418 1418
18 20804951 20805962 - Vvi18g1419 Vvi18g1419 1419
       

DecoBrowse