Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g734 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa07g01045 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g01032 Cme01g01114
Vvi19g735 . . . . . . . Bma13g01140 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda12g00986 . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi05g00518 . . .
Vvi19g736 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g737 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g738 . . . . . Bpe08g01076 . . . . . . . . . . . . . . . . . . Cla10g00394 Cam10g0394 Cec10g0416 Cco10g0406 Clacu10g0401 Cmu10g1234 Cre10g0649 . . . Cone15ag1292 . Csa03g00399 . Cme06g02730 . . . . . . . . Sed08g2892 . . . Cma16g01004 . Car16g00958 Cpe14g00794 . Bhi11g00437 Tan01g1869 Cmetu06g2755 . Hepe06g0640 Mch10g1419 . . . . . . . . . . Chy06g01913 .
Vvi19g739 . Blo03g01490 . . . . . . . . . . . . . . . . . . . . . . Cla10g00393 . . . . . . . . . . . . . Cme06g02729 . . . . . . . . . . . . . . . Cpe14g00795 . Bhi11g00436 . . . . Mch10g1418 . . . . . . . . . . Chy06g01914 .
Vvi19g740 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag1291 . . . . . . . . . . . Bma14g00662 . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g741 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma14g00660 . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g742 . . . . . . . . . . Cma01g01047 . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g01789 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g743 Blo03g00483 . . . . . . . . . . . . . . . . . . . . . . . Cla10g00392 Cam10g0392 Cec10g0414 Cco10g0404 Clacu10g0399 Cmu10g1232 Cre10g0647 . . . . . Csa03g00398 . Cme06g02728 . . . . . . . . Sed08g2890 . . . . . . . . Bhi11g00434 Tan01g1872 Cmetu06g1807 . . Mch10g1417 . . . . . . . . . . Chy06g01915 .
   
Previous Page 2319 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
12 41186398 41199527 - Bda033190 Bda12g00986 986
11 10303469 10308195 + XM_039048863.1 Bhi11g00434 434
11 10308339 10310031 + XM_039048860.1 Bhi11g00436 436
11 10345869 10362616 - XM_039047359.1 Bhi11g00437 437
3 16996489 17002017 - BLOR11664 Blo03g00483 483
3 41742301 41743455 + BLOR12671 Blo03g01490 1490
13 44606234 44609414 - Bma030626 Bma13g01140 1140
14 7141611 7143451 - Bma011108.1 Bma14g00660 660
14 7159398 7166283 - Bma011110.2 Bma14g00662 662
8 12899590 12912385 + Bpe023201.1 Bpe08g01076 1076
10 6250148 6256759 + CaPI482276_10g003920.1 Cam10g0392 392
10 6265984 6284667 - CaPI482276_10g003940.1 Cam10g0394 394
16 7993289 7995184 - Carg25225-RA Car16g00958 958
10 4771914 4778146 + CcPI632755_10g004040.1 Cco10g0404 404
10 4785976 4805026 - CcPI632755_10g004060.1 Cco10g0406 406
10 4972194 4979167 + CePI673135_10g004140.1 Cec10g0414 414
10 4988145 5005391 - CePI673135_10g004160.1 Cec10g0416 416
1 11033532 11045556 + Chy1G010320.1 Chy01g01032 1032
6 23040476 23057717 + Chy6G124410.1 Chy06g01913 1913
6 23063374 23064615 - Chy6G124420.1 Chy06g01914 1914
6 23065465 23067357 - Chy6G124430.1 Chy06g01915 1915
10 5040621 5046372 + ClG42_10g0039900.10 Clacu10g0399 399
10 5054567 5073574 - ClG42_10g0040100.10 Clacu10g0401 401
10 5330239 5336474 + ClCG10G004160.2 Cla10g00392 392
10 5337027 5340571 + ClCG10G004170.1 Cla10g00393 393
10 5344367 5364054 - ClCG10G004180.2 Cla10g00394 394
1 7737037 7743287 - CmaCh01G010470.1 Cma01g01047 1047
16 7735848 7737743 - CmaCh16G010040.1 Cma16g01004 1004
1 14126816 14138932 + MELO3C013221.2.1 Cme01g01114 1114
6 34485999 34490967 + MELO3C032282.2.1 Cme06g02728 2728
6 34491299 34492552 + MELO3C014085.2.1 Cme06g02729 2729
6 34497035 34514919 - MELO3C014086.2.1 Cme06g02730 2730
6 27257071 27261767 - PI0013870.1 Cmetu06g1807 1807
6 27232734 27250921 + PI0018591.1 Cmetu06g2755 2755
10 5181265 5187506 + CmPI595203_10g012320.1 Cmu10g1232 1232
10 5195702 5214738 - CmPI595203_10g012340.1 Cmu10g1234 1234
15 10112656 10114980 + Conep15aG0132000.1 Cone15ag1291 1291
15 10115108 10125467 - Conep15aG0132100.1 Cone15ag1292 1292
14 6258059 6274812 + Cp4.1LG14g07860.1 Cpe14g00794 794
14 6275267 6277267 - Cp4.1LG14g07930.1 Cpe14g00795 795
10 6088277 6094508 + CrPI670011_10g006470.1 Cre10g0647 647
10 6103563 6122740 - CrPI670011_10g006490.1 Cre10g0649 649
3 3354246 3359130 + CsaV3_3G003980.1 Csa03g00398 398
3 3363879 3381781 - CsaV3_3G003990.1 Csa03g00399 399
7 9888824 9899014 - CsaV3_7G021340.1 Csa07g01045 1045
6 48408141 48425342 + Hsped.06g06400.1 Hepe06g0640 640
2 23696701 23704289 - Lsi02G017890.1 Lsi02g01789 1789
5 6490469 6494210 + Lsi05G005180.1 Lsi05g00518 518
10 13332115 13336174 + MC10g1122 Mch10g1417 1417
10 13337135 13338483 + MC10g1123 Mch10g1418 1418
10 13348347 13365819 - MC10g1124 Mch10g1419 1419
8 39979829 39992102 + Sed0010573.4 Sed08g2890 2890
8 39995328 40010764 - Sed0018073.1 Sed08g2892 2892
1 19987599 20005350 + Tan0010368.1 Tan01g1869 1869
1 20010468 20014845 - Tan0012574.1 Tan01g1872 1872
19 9376973 9384076 - Vvi19g734 Vvi19g734 734
19 9387449 9392138 + Vvi19g735 Vvi19g735 735
19 9406493 9411450 - Vvi19g736 Vvi19g736 736
19 9421065 9425262 + Vvi19g737 Vvi19g737 737
19 9435390 9479675 + Vvi19g738 Vvi19g738 738
19 9479750 9482266 - Vvi19g739 Vvi19g739 739
19 9482388 9486598 - Vvi19g740 Vvi19g740 740
19 9488657 9491530 - Vvi19g741 Vvi19g741 741
19 9491541 9495825 - Vvi19g742 Vvi19g742 742
19 9497777 9504060 - Vvi19g743 Vvi19g743 743
       

DecoBrowse