Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g744 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g745 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g746 . . . . . . . . . . . . Car01g00923 . . . . . . . . . . . . . . . . . . . . . Cone15ag1290 . . . . . . . . Bpe11g00609 . . . . Cmo01g01089 . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g747 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g748 . . . Bda09g00449 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag1289 . . . . . . . . . . Bma07g01235 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g749 . . . . Bpe09g00103 . Bma10g00607 . . . . . . . . . . . . . . . . . Cla10g00390 Cam10g0390 Cec10g0412 Cco10g0402 Clacu10g0397 Cmu10g1230 Cre10g0645 . . . Cone15ag1288 . Csa03g00397 . Cme06g02727 . Blo10g00884 Bda05g00666 . . . . . Sed08g2886 . . . . . . Cpe14g00796 . Bhi11g00432 Tan01g1873 Cmetu06g2534 . . Mch10g1408 . . . . . . . . . . Chy06g01916 .
Vvi19g750 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag1286 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g751 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag1285 . Csa07g01048 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g01025 Cme01g01107
Vvi19g752 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g753 . . . . . . . . Cmo16g01043 . . . . . . . . . . . . . . . Cla10g00388 Cam10g0388 Cec10g0409 Cco10g0400 Clacu10g0395 Cmu10g1229 Cre10g0644 . . . Cone15ag1283 . Csa03g00396 . Cme06g02725 . . . . . . . . . . . . . . . Cpe14g00805 . Bhi11g00429 . . . Hepe06g0677 . . . . . . . . . . . Chy06g01918 .
   
Previous Page 2320 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
5 54972814 54980566 - Bda033651 Bda05g00666 666
9 5909960 5910238 - Bda031038.1 Bda09g00449 449
11 10203360 10206829 - XM_039047666.1 Bhi11g00429 429
11 10266112 10277555 + XM_039049730.1 Bhi11g00432 432
10 27829279 27837471 + BLOR02674 Blo10g00884 884
7 47273462 47273869 + Bma026488.1 Bma07g01235 1235
10 7684150 7693675 - Bma030362 Bma10g00607 607
9 701788 707593 - Bpe026198 Bpe09g00103 103
11 4625873 4629576 + Bpe003974.1 Bpe11g00609 609
10 6196927 6202049 - CaPI482276_10g003880.1 Cam10g0388 388
10 6223088 6236434 + CaPI482276_10g003900.1 Cam10g0390 390
1 8932145 8936293 - Carg23359-RA Car01g00923 923
10 4718153 4721519 - CcPI632755_10g004000.1 Cco10g0400 400
10 4744657 4759535 + CcPI632755_10g004020.1 Cco10g0402 402
10 4914979 4917855 - CePI673135_10g004090.1 Cec10g0409 409
10 4940963 4954611 + CePI673135_10g004120.1 Cec10g0412 412
1 10844064 10856019 - Chy1G010250.1 Chy01g01025 1025
6 23082027 23092518 - Chy6G124440.1 Chy06g01916 1916
6 23107745 23110168 + Chy6G124460.1 Chy06g01918 1918
10 4988883 4992348 - ClG42_10g0039500.10 Clacu10g0395 395
10 5014620 5028275 + ClG42_10g0039700.10 Clacu10g0397 397
10 5273841 5277647 - ClCG10G004120.2 Cla10g00388 388
10 5300075 5313984 + ClCG10G004140.2 Cla10g00390 390
1 13928582 13950292 - MELO3C013214.2.1 Cme01g01107 1107
6 34449723 34453285 - MELO3C014082.2.1 Cme06g02725 2725
6 34464898 34478127 + MELO3C014084.2.1 Cme06g02727 2727
6 27265566 27276537 - PI0016651.1 Cmetu06g2534 2534
1 9072177 9076518 - CmoCh01G010890.1 Cmo01g01089 1089
16 7274088 7278766 + CmoCh16G010430.1 Cmo16g01043 1043
10 5129889 5133169 - CmPI595203_10g012290.1 Cmu10g1229 1229
10 5155702 5169704 + CmPI595203_10g012300.1 Cmu10g1230 1230
15 10064682 10068958 + Conep15aG0131200.1 Cone15ag1283 1283
15 10071865 10076273 - Conep15aG0131400.1 Cone15ag1285 1285
15 10076416 10081288 + Conep15aG0131500.1 Cone15ag1286 1286
15 10082089 10088753 + Conep15aG0131700.1 Cone15ag1288 1288
15 10089113 10089894 - Conep15aG0131800.1 Cone15ag1289 1289
15 10092671 10096163 + Conep15aG0131900.1 Cone15ag1290 1290
14 6286278 6295112 - Cp4.1LG14g08000.1 Cpe14g00796 796
14 6369643 6376112 - Cp4.1LG14g08030.1 Cpe14g00805 805
10 6034580 6037887 - CrPI670011_10g006440.1 Cre10g0644 644
10 6060734 6074783 + CrPI670011_10g006450.1 Cre10g0645 645
3 3323657 3329632 - CsaV3_3G003960.1 Csa03g00396 396
3 3338660 3350610 + CsaV3_3G003970.1 Csa03g00397 397
7 9997403 10014716 + CsaV3_7G021370.1 Csa07g01048 1048
6 50705519 50708353 - Hsped.06g06770.1 Hepe06g0677 677
10 13218387 13233649 + MC10g1118 Mch10g1408 1408
8 39965803 39976721 + Sed0022328.1 Sed08g2886 2886
1 20020815 20035258 - Tan0000991.1 Tan01g1873 1873
19 9531037 9539130 + Vvi19g744 Vvi19g744 744
19 9539804 9543833 - Vvi19g745 Vvi19g745 745
19 9552235 9556795 - Vvi19g746 Vvi19g746 746
19 9564243 9567519 - Vvi19g747 Vvi19g747 747
19 9657886 9658472 + Vvi19g748 Vvi19g748 748
19 9659261 9673621 - Vvi19g749 Vvi19g749 749
19 9695172 9706004 - Vvi19g750 Vvi19g750 750
19 9727790 9736298 + Vvi19g751 Vvi19g751 751
19 9739587 9743061 + Vvi19g752 Vvi19g752 752
19 9748020 9752714 - Vvi19g753 Vvi19g753 753
       

DecoBrowse