Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g966 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi03g00705 . . Cme01g00204 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g00218 .
Vvi3g967 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g968 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g969 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone5ag0329 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g970 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g971 . . . . . . . . . . . . . . . . . Bhi05g00928 . . . . . . . . . . . . . . . . . . Csa07g00588 . Cme01g00208 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g00222 .
Vvi3g972 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g973 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g974 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g975 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00905 Cam10g0930 Cec10g0971 Cco10g0929 Clacu10g0955 Cmu10g1739 Cre10g1113 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 335 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
5 32477499 32481725 - XM_039033138.1 Bhi05g00928 928
10 21126363 21129880 - CaPI482276_10g009300.1 Cam10g0930 930
10 20196235 20199823 - CcPI632755_10g009290.1 Cco10g0929 929
10 21982908 21991332 - CePI673135_10g009710.1 Cec10g0971 971
1 1497318 1502163 + Chy1G002180.1 Chy01g00218 218
1 1531107 1535135 + Chy1G002220.1 Chy01g00222 222
10 20680603 20684714 - ClG42_10g0095500.10 Clacu10g0955 955
10 21614492 21617527 - ClCG10G009480.1 Cla10g00905 905
1 1458237 1462929 + MELO3C018603.2.1 Cme01g00204 204
1 1494618 1499133 + MELO3C018607.2.1 Cme01g00208 208
10 21295950 21300062 - CmPI595203_10g017390.1 Cmu10g1739 1739
5 1387439 1390045 - Conep05aG0034000.1 Cone5ag0329 329
10 22994780 22998188 - CrPI670011_10g011130.1 Cre10g1113 1113
7 4263074 4268045 - CsaV3_7G006870.1 Csa07g00588 588
3 9282049 9287047 - Lsi03G007050.1 Lsi03g00705 705
3 15021585 15049296 - Vvi3g966 Vvi3g966 966
3 15117057 15117570 - Vvi3g967 Vvi3g967 967
3 15118889 15122036 + Vvi3g968 Vvi3g968 968
3 15151188 15174582 + Vvi3g969 Vvi3g969 969
3 15175240 15184285 - Vvi3g970 Vvi3g970 970
3 15191605 15195649 + Vvi3g971 Vvi3g971 971
3 15200148 15202458 + Vvi3g972 Vvi3g972 972
3 15251289 15254152 - Vvi3g973 Vvi3g973 973
3 15262807 15265152 + Vvi3g974 Vvi3g974 974
3 15307069 15312521 + Vvi3g975 Vvi3g975 975
       

DecoBrowse