Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1046 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g1047 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g1048 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g1049 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g1050 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g1051 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo16g00528 . . . . Cpe14g00411 Cpe01g00555 . . . . . . . . . . . . . . . . . .
Vvi3g1052 . . . . . . . . . . . . . . . . Cpe15g00350 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g1053 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g1054 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo16g00530 . . . . Cpe14g00413 . . . . . . . . . . . . . . . . . . .
Vvi3g1055 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma19g00456 . Car19g00327 . . . . . . . . . . . . . . . . . . . .
   
Previous Page 343 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
19 5138795 5144121 - Carg27400-RA Car19g00327 327
19 5489938 5495456 - CmaCh19G004560.1 Cma19g00456 456
16 2551035 2559042 - CmoCh16G005280.1 Cmo16g00528 528
16 2567243 2583279 - CmoCh16G005300.1 Cmo16g00530 530
1 3201906 3211276 + Cp4.1LG01g01070.1 Cpe01g00555 555
14 2554662 2563097 - Cp4.1LG14g03080.1 Cpe14g00411 411
14 2568392 2597426 - Cp4.1LG14g02970.1 Cpe14g00413 413
15 4719565 4722725 + Cp4.1LG15g03480.1 Cpe15g00350 350
3 17711833 17712934 + Vvi3g1046 Vvi3g1046 1046
3 17740388 17741429 + Vvi3g1047 Vvi3g1047 1047
3 17775737 17787000 + Vvi3g1048 Vvi3g1048 1048
3 17818133 17820344 + Vvi3g1049 Vvi3g1049 1049
3 17820576 17828165 + Vvi3g1050 Vvi3g1050 1050
3 17828185 17835444 - Vvi3g1051 Vvi3g1051 1051
3 17875980 17882649 + Vvi3g1052 Vvi3g1052 1052
3 17885346 17885890 + Vvi3g1053 Vvi3g1053 1053
3 17886449 17891388 - Vvi3g1054 Vvi3g1054 1054
3 17891887 17906378 - Vvi3g1055 Vvi3g1055 1055
       

DecoBrowse