Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g761 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g762 . . . . . . . . . . . . . . . . . . . . . . . . Cla05g02523 Cam05g2708 Cec05g2741 Cco05g2779 Clacu05g2711 Cmu05g2565 Cre05g2679 Cone13ag1023 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy09g00321 .
Vvi1g763 . Blo16g01151 . Bda11g01255 Bpe13g01452 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g00524 . . . . . . Bda11g01255 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g764 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g765 . . . . . . . . Cmo04g01656 . . . . . . . . . . . . . . . . . . . . . . Cone13ag1022 . . . . Csa05g02357 Chy10g00923 Cme10g00503 . . . . . . . . . . . . . Car04g01631 . . Cpe07g00685 . . . . . . . . . . . . . . . . Chy09g00320 .
Vvi1g766 . . . . . . Bma14g01776 . . . . . . . . . . . . . . . . . Cla05g02522 Cam05g2707 Cec05g2740 Cco05g2778 Clacu05g2710 Cmu05g2564 Cre05g2678 Cone13ag1021 . . . Lsi04g00523 Csa05g02358 Chy10g00924 Cme10g00502 . Blo11g00901 Bda07g01583 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g767 . Blo16g01150 . Bda11g01254 Bpe13g01451 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0647 . . . . . . . . Bda11g01254 . . . Bma06g00630 . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g768 . . . . . Bpe10g00827 . Bma15g00197 Cmo04g01658 . . . . . . . Cpe01g01404 . . . . . . . Cla05g02521 Cam05g2706 Cec05g2739 Cco05g2774 Clacu05g2709 Cmu05g2563 Cre05g2677 Cone13ag1020 . . . Lsi04g00522 Csa05g02359 Chy10g00925 Cme10g00501 . . . . . . . . . . . Cma04g01586 . Car04g01632 . . . . . . . . . . . . . . . . . . . . .
Vvi1g769 . . . . Bpe13g00481 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0644 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01684 . .
Vvi1g770 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 77 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
7 29380267 29380584 + Bda028449.1 Bda07g01583 1583
11 13159469 13161014 - Bda007769.1 Bda11g01254 1254
11 13165992 13169320 - Bda007770.1 Bda11g01255 1255
11 18120700 18121563 + BLOR03777 Blo11g00901 901
16 40032809 40034551 - BLOR21937 Blo16g01150 1150
16 40037414 40039306 - BLOR21938 Blo16g01151 1151
6 33471897 33473176 + Bma023574.1 Bma06g00630 630
14 38163474 38164067 + Bma012546.1 Bma14g01776 1776
15 2014119 2015202 - Bma013179.1 Bma15g00197 197
10 14290323 14291749 + Bpe003131.1 Bpe10g00827 827
13 12257990 12262446 + Bpe010192.1 Bpe13g00481 481
13 19790872 19792411 - Bpe011115.1 Bpe13g01451 1451
13 19808848 19810725 - Bpe011116.1 Bpe13g01452 1452
5 34432199 34433522 + CaPI482276_05g027060.1 Cam05g2706 2706
5 34435142 34435684 + CaPI482276_05g027070.1 Cam05g2707 2707
5 34439056 34441650 - CaPI482276_05g027080.1 Cam05g2708 2708
4 9417379 9419848 + Carg01769-RA Car04g01631 1631
4 9421186 9422623 - Carg01768-RA Car04g01632 1632
5 35560921 35562244 + CcPI632755_05g027740.1 Cco05g2774 2774
5 35578016 35578558 + CcPI632755_05g027780.1 Cco05g2778 2778
5 35582102 35584691 - CcPI632755_05g027790.1 Cco05g2779 2779
5 37882452 37883775 + CePI673135_05g027390.1 Cec05g2739 2739
5 37885394 37885936 + CePI673135_05g027400.1 Cec05g2740 2740
5 37890659 37893277 - CePI673135_05g027410.1 Cec05g2741 2741
9 2737732 2746664 - Chy9G160360.1 Chy09g00320 320
9 2758108 2763536 - Chy9G160370.1 Chy09g00321 321
10 14895853 14901507 + Chy10G181170.1 Chy10g00923 923
10 14902866 14903409 - Chy10G181180.1 Chy10g00924 924
10 14905033 14906374 - Chy10G181190.1 Chy10g00925 925
5 34639592 34640915 + ClG42_05g0270900.10 Clacu05g2709 2709
5 34642532 34643074 + ClG42_05g0271000.10 Clacu05g2710 2710
5 34646411 34649005 - ClG42_05g0271100.10 Clacu05g2711 2711
5 36564091 36565553 + ClCG05G025120.1 Cla05g02521 2521
5 36567084 36567729 + ClCG05G025130.1 Cla05g02522 2522
5 36570980 36573572 - ClCG05G025140.1 Cla05g02523 2523
4 8031735 8032930 - CmaCh04G015860.1 Cma04g01586 1586
10 3215506 3218735 + MELO3C012017.2.1 Cme10g00501 501
10 3219007 3220287 + MELO3C012016.2.1 Cme10g00502 502
10 3223958 3226995 - MELO3C012015.2.1 Cme10g00503 503
4 8442498 8444916 + CmoCh04G016560.1 Cmo04g01656 1656
4 8448618 8450113 - CmoCh04G016580.1 Cmo04g01658 1658
5 34377513 34379825 + CmPI595203_05g025630.1 Cmu05g2563 2563
5 34380453 34380995 + CmPI595203_05g025640.1 Cmu05g2564 2564
5 34384334 34386926 - CmPI595203_05g025650.1 Cmu05g2565 2565
8 6372087 6377129 - Conep08aG0066500.1 Cone8ag0644 644
8 6434382 6435723 - Conep08aG0067000.1 Cone8ag0647 647
13 8517588 8519141 + Conep13aG0105100.1 Cone13ag1020 1020
13 8520576 8521134 + Conep13aG0105200.1 Cone13ag1021 1021
13 8525596 8527256 - Conep13aG0105300.1 Cone13ag1022 1022
13 8527758 8529891 - Conep13aG0105400.1 Cone13ag1023 1023
1 8448268 8451393 - Cp4.1LG01g12930.1 Cpe01g01404 1404
7 5720343 5723297 + Cp4.1LG07g06860.1 Cpe07g00685 685
5 37733243 37734566 + CrPI670011_05g026770.1 Cre05g2677 2677
5 37736169 37736711 + CrPI670011_05g026780.1 Cre05g2678 2678
5 37740165 37742757 - CrPI670011_05g026790.1 Cre05g2679 2679
5 20040119 20069665 + CsaV3_5G025030.1 Csa05g01684 1684
5 25883079 25886085 + CsaV3_5G031760.1 Csa05g02357 2357
5 25888965 25889508 - CsaV3_5G031770.1 Csa05g02358 2358
5 25891094 25892435 - CsaV3_5G031780.1 Csa05g02359 2359
4 4829095 4830754 + Lsi04G005220.1 Lsi04g00522 522
4 4832410 4833292 + Lsi04G005230.1 Lsi04g00523 523
4 4839283 4842563 - Lsi04G005240.1 Lsi04g00524 524
1 9257530 9285762 + Vvi1g761 Vvi1g761 761
1 9295368 9299506 + Vvi1g762 Vvi1g762 762
1 9302373 9306029 + Vvi1g763 Vvi1g763 763
1 9306046 9307010 + Vvi1g764 Vvi1g764 764
1 9309084 9312774 + Vvi1g765 Vvi1g765 765
1 9337034 9338314 - Vvi1g766 Vvi1g766 766
1 9342574 9344861 + Vvi1g767 Vvi1g767 767
1 9345790 9354378 - Vvi1g768 Vvi1g768 768
1 9369140 9379711 + Vvi1g769 Vvi1g769 769
1 9381742 9382568 + Vvi1g770 Vvi1g770 770
       

DecoBrowse