Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g941 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g942 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g943 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g944 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g945 . . . . Bpe13g01395 . . . Cmo04g01650 . . . Car04g01628 . Sed08g1575 . Cpe01g01400 Bhi07g01449 Tan04g0961 Cmetu10g1342 Lac13g0407 Hepe10g1818 . . . . . . . . . Cone13ag0930 Cone19ag0923 Cone6ag0559 Cone9ag0566 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g946 . . . . Bpe13g01393 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cpe07g00645 . . . . . . . . . . . . . . . . . .
Vvi1g947 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g948 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g949 . . . . . Bpe10g00888 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0560 Cone9ag0567 . . . . . Blo11g00787 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g950 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 95 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
7 42675450 42681402 - XM_039036837.1 Bhi07g01449 1449
11 11885021 11886103 - BLOR03663 Blo11g00787 787
10 14627429 14628496 - Bpe003192.1 Bpe10g00888 888
13 19128756 19132453 + Bpe011054.1 Bpe13g01393 1393
13 19170519 19174160 + Bpe011056.1 Bpe13g01395 1395
4 9396036 9398058 - Carg01772-RA Car04g01628 1628
10 19805815 19810259 + PI0018883.1 Cmetu10g1342 1342
4 8410648 8416957 - CmoCh04G016500.1 Cmo04g01650 1650
6 2748622 2752313 + Conep06aG0057200.1 Cone6ag0559 559
6 2752478 2754309 + Conep06aG0057300.1 Cone6ag0560 560
9 2677404 2679942 + Conep09aG0057600.1 Cone9ag0566 566
9 2680284 2681920 + Conep09aG0057700.1 Cone9ag0567 567
13 8072561 8076458 + Conep13aG0095800.1 Cone13ag0930 930
19 7124008 7129225 + Conep19aG0095100.1 Cone19ag0923 923
1 8421767 8423909 - Cp4.1LG01g13120.1 Cpe01g01400 1400
7 4620074 4625269 - Cp4.1LG07g06420.1 Cpe07g00645 645
10 54952807 54957174 + Hsped.10g18180.1 Hepe10g1818 1818
13 2863741 2869245 + Lag0040203.1 Lac13g0407 407
8 30853220 30861366 - Sed0004252.1 Sed08g1575 1575
4 8460571 8465030 - Tan0017767.1 Tan04g0961 961
1 12671768 12677262 + Vvi1g941 Vvi1g941 941
1 13613304 13619694 - Vvi1g942 Vvi1g942 942
1 13660621 13660717 + Vvi1g943 Vvi1g943 943
1 13666014 13666974 + Vvi1g944 Vvi1g944 944
1 13673094 13679538 - Vvi1g945 Vvi1g945 945
1 13694247 13718634 + Vvi1g946 Vvi1g946 946
1 13733708 13735709 - Vvi1g947 Vvi1g947 947
1 13745872 13755481 - Vvi1g948 Vvi1g948 948
1 13783129 13784495 + Vvi1g949 Vvi1g949 949
1 13804449 13805055 + Vvi1g950 Vvi1g950 950
       

DecoBrowse