Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g626 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g627 . . . . . . . . . . . . . . . . . . . . . . . . Cla02g00635 Cam02g0668 Cec02g0675 Cco02g0698 Clacu02g0676 Cmu02g0670 Cre02g0991 . Cone8ag1104 . . Lsi10g00698 . . . . . Bda15g00842 Bda14g01457 . . Bma03g01363 . . Cmo04g00501 Cmo16g00363 . . . . Cpe14g00281 . . . . . . . . . . . . . . . . . . .
Vvi3g628 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g629 . . . . . . . . . Cmo11g01393 . . . . . . . . . . . . . . . . . . . . . Cone12ag1069 . . . Lsi03g00532 . . . . . . Bda14g01458 . . Bma03g01363 . . . . . . Car11g01119 . . Cpe01g00421 . . . . . . . . . . . . . . . . . .
Vvi3g630 . . . . . . . . Cmo19g00594 . . . . . . . Cpe15g00466 . . . . . . . Cla02g00636 Cam02g0669 Cec02g0677 Cco02g0699 Clacu02g0677 Cmu02g0671 Cre02g0992 . . . . Lsi03g00533 . . . . . . . . . Bma03g01362 . . . . . Cma19g00579 . Car19g00439 . . . . . . . . . . . . . . . . . . . .
Vvi3g631 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g632 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g633 . . . . . . Bma05g00532 . Cmo19g00593 Cmo11g01394 . . . . . . Cpe15g00465 Bhi05g01106 . . . . . . Cla02g00640 . . . . . . . . . . Lsi03g00535 Csa07g00718 . Cme01g00089 . . . . . . . . . . . Cma11g01721 Cma19g00578 Car11g01120 Car19g00438 . . . . . . . . . . . . . . . . . . Chy01g00097 .
Vvi3g634 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g635 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 301 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
14 19830066 19831768 + Bda011202.1 Bda14g01457 1457
14 19900844 19902550 - Bda011203.1 Bda14g01458 1458
15 12910910 12912413 + Bda012713.1 Bda15g00842 842
5 39959536 39961309 - XM_039032769.1 Bhi05g01106 1106
3 30838984 30842280 + Bma017910.1 Bma03g01362 1362
3 30918434 30920141 + Bma017911.1 Bma03g01363 1363
5 27749285 27750850 - Bma021492.1 Bma05g00532 532
2 7811473 7814130 - CaPI482276_02g006680.1 Cam02g0668 668
2 7842684 7846020 - CaPI482276_02g006690.1 Cam02g0669 669
11 8903347 8904869 - Carg26858-RA Car11g01119 1119
11 8917056 8919209 - Carg26859-RA Car11g01120 1120
19 6137021 6138502 + Carg16360-RA Car19g00438 438
19 6142400 6146101 + Carg16361-RA Car19g00439 439
2 7064879 7067533 - CcPI632755_02g006980.1 Cco02g0698 698
2 7097299 7100659 - CcPI632755_02g006990.1 Cco02g0699 699
2 6962907 6965556 - CePI673135_02g006750.1 Cec02g0675 675
2 6995807 6999157 - CePI673135_02g006770.1 Cec02g0677 677
1 630928 631974 + Chy1G000970.1 Chy01g00097 97
2 6824667 6827284 - ClG42_02g0067600.10 Clacu02g0676 676
2 6857581 6860924 - ClG42_02g0067700.10 Clacu02g0677 677
2 7140410 7143224 - ClCG02G006330.1 Cla02g00635 635
2 7172992 7177039 - ClCG02G006340.2 Cla02g00636 636
2 7324911 7328364 + ClCG02G006380.1 Cla02g00640 640
11 11401288 11402724 + CmaCh11G017210.1 Cma11g01721 1721
19 6455405 6458074 - CmaCh19G005780.1 Cma19g00578 578
19 6462759 6472699 + CmaCh19G005790.1 Cma19g00579 579
1 601274 602721 - MELO3C018489.2.1 Cme01g00089 89
4 2509137 2510695 + CmoCh04G005010.1 Cmo04g00501 501
11 9761168 9762803 - CmoCh11G013930.1 Cmo11g01393 1393
11 9779961 9782614 - CmoCh11G013940.1 Cmo11g01394 1394
16 1669071 1670855 + CmoCh16G003630.1 Cmo16g00363 363
19 6642452 6643930 + CmoCh19G005930.1 Cmo19g00593 593
19 6647791 6652234 + CmoCh19G005940.1 Cmo19g00594 594
2 6730979 6733596 - CmPI595203_02g006700.1 Cmu02g0670 670
2 6763880 6767226 - CmPI595203_02g006710.1 Cmu02g0671 671
8 9854077 9857016 + Conep08aG0113500.1 Cone8ag1104 1104
12 8816572 8818420 + Conep12aG0110300.1 Cone12ag1069 1069
1 2441840 2443597 + Cp4.1LG01g02490.1 Cpe01g00421 421
14 1642661 1644789 + Cp4.1LG14g04430.1 Cpe14g00281 281
15 5687074 5688552 + Cp4.1LG15g04670.1 Cpe15g00465 465
15 5692223 5696560 + Cp4.1LG15g04650.1 Cpe15g00466 466
2 7370929 7373588 - CrPI670011_02g009910.1 Cre02g0991 991
2 7402874 7406177 - CrPI670011_02g009920.1 Cre02g0992 992
7 5123435 5123964 - CsaV3_7G008170.1 Csa07g00718 718
3 6272532 6276031 - Lsi03G005320.1 Lsi03g00532 532
3 6299362 6304309 - Lsi03G005330.1 Lsi03g00533 533
3 6388721 6390157 + Lsi03G005350.1 Lsi03g00535 535
10 9757281 9762481 - Lsi10G006980.1 Lsi10g00698 698
3 6179624 6179759 - Vvi3g626 Vvi3g626 626
3 6179764 6181426 - Vvi3g627 Vvi3g627 627
3 6198942 6211821 - Vvi3g628 Vvi3g628 628
3 6212205 6214061 - Vvi3g629 Vvi3g629 629
3 6217556 6226884 - Vvi3g630 Vvi3g630 630
3 6255541 6256035 - Vvi3g631 Vvi3g631 631
3 6263541 6270080 - Vvi3g632 Vvi3g632 632
3 6282000 6283513 + Vvi3g633 Vvi3g633 633
3 6313286 6314625 + Vvi3g634 Vvi3g634 634
3 6314641 6315822 + Vvi3g635 Vvi3g635 635
       

DecoBrowse