Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g636 . . . . . . . . Cmo19g00592 Cmo11g01395 . . . . . . Cpe15g00464 Bhi05g01104 . . . . . . Cla02g00642 . . . . . . . . . . Lsi03g00537 Csa07g00717 . Cme01g00090 . . . . . . . . . . . Cma11g01720 . Car11g01121 . . . . . . . . . . . . . . . . . . . Chy01g00098 .
Vvi3g637 . . . . . . . . Cmo19g00591 . . . . . . . Cpe15g00463 . . . . . . . Cla02g00643 Cam02g0676 Cec02g0689 Cco02g0708 Clacu02g0684 Cmu02g0679 Cre02g0998 Cone12ag1066 Cone8ag1102 . . Lsi03g00540 . . . . . . Bda14g01460 . . Bma03g01369 . . . . . Cma19g00577 . Car19g00436 . . . . . . . . . . . . . . . . . . . .
Vvi3g638 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g639 Blo02g00951 . . . . . Bma05g00679 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1005 Cone10ag1023 . . . . . . . . . Bpe05g00494 . . . . Cmo16g00362 . . . . Cpe14g00280 . . . . . . . . . . . . . . . . . . .
Vvi3g640 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g641 . . . Bda08g00661 Bpe07g00258 . . Bma12g00263 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g642 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g643 . . . . . . . . Cmo19g00589 . . . . . . . Cpe15g00460 . . . . . . . Cla02g00647 Cam02g0680 Cec02g0693 Cco02g0713 Clacu02g0688 Cmu02g0683 Cre02g1002 . . . . Lsi03g00543 . . . . . . . . . . . . . . . Cma19g00575 . Car19g00434 . . . . . . . . . . . . . . . . . . . .
Vvi3g644 . . . . . . . . Cmo19g00588 . . . . . . . Cpe15g00459 . . . . . . . Cla02g00648 Cam02g0681 Cec02g0694 Cco02g0714 Clacu02g0689 Cmu02g0684 Cre02g1003 . . . . Lsi03g00545 . . . . . . Bda14g01462 . . Bma03g01372 . . . . . Cma19g00573 . Car19g00433 . . . . . . . . . . . . . . . . . . . .
Vvi3g645 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 302 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
8 6907065 6908229 + Bda029122.1 Bda08g00661 661
14 20036122 20043674 + Bda011209.1 Bda14g01460 1460
14 20329108 20329788 - Bda011213.1 Bda14g01462 1462
5 39881868 39885658 - XM_039032547.1 Bhi05g01104 1104
2 36883119 36887114 - BLOR10681 Blo02g00951 951
3 32105176 32107463 - Bma017928.1 Bma03g01369 1369
3 32284875 32285555 - Bma017932.1 Bma03g01372 1372
5 39494575 39498172 - Bma021734.1 Bma05g00679 679
12 3473160 3489788 + Bma007157.2 Bma12g00263 263
5 19153462 19157064 - Bpe017914.1 Bpe05g00494 494
7 1860284 1864824 + Bpe021070.1 Bpe07g00258 258
2 8010434 8016916 - CaPI482276_02g006760.1 Cam02g0676 676
2 8052040 8052741 - CaPI482276_02g006800.1 Cam02g0680 680
2 8070340 8071728 + CaPI482276_02g006810.1 Cam02g0681 681
11 8943311 8944747 - Carg26986-RA Car11g01121 1121
19 6112714 6113418 + Carg16355-RA Car19g00433 433
19 6114882 6115783 - Carg16356-RA Car19g00434 434
19 6121314 6126408 + Carg16358-RA Car19g00436 436
2 7293626 7299987 - CcPI632755_02g007080.1 Cco02g0708 708
2 7335890 7336591 - CcPI632755_02g007130.1 Cco02g0713 713
2 7359472 7360804 + CcPI632755_02g007140.1 Cco02g0714 714
2 7208900 7215404 - CePI673135_02g006890.1 Cec02g0689 689
2 7248543 7249220 - CePI673135_02g006930.1 Cec02g0693 693
2 7277903 7279303 + CePI673135_02g006940.1 Cec02g0694 694
1 640763 642253 + Chy1G000980.1 Chy01g00098 98
2 7027405 7037298 - ClG42_02g0068400.10 Clacu02g0684 684
2 7070090 7070791 - ClG42_02g0068800.10 Clacu02g0688 688
2 7094574 7095957 + ClG42_02g0068900.10 Clacu02g0689 689
2 7349618 7352948 + ClCG02G006400.1 Cla02g00642 642
2 7362929 7369261 - ClCG02G006410.2 Cla02g00643 643
2 7404275 7404976 - ClCG02G006450.1 Cla02g00647 647
2 7428664 7430119 + ClCG02G006460.1 Cla02g00648 648
11 11395794 11397233 - CmaCh11G017200.1 Cma11g01720 1720
19 6436540 6438097 - CmaCh19G005730.1 Cma19g00573 573
19 6443561 6445000 - CmaCh19G005750.1 Cma19g00575 575
19 6449714 6455077 + CmaCh19G005770.1 Cma19g00577 577
1 614227 616014 + MELO3C018490.2.1 Cme01g00090 90
11 9791042 9792478 - CmoCh11G013950.1 Cmo11g01395 1395
16 1663328 1666481 - CmoCh16G003620.1 Cmo16g00362 362
19 6622691 6623395 + CmoCh19G005880.1 Cmo19g00588 588
19 6624694 6625758 - CmoCh19G005890.1 Cmo19g00589 589
19 6630403 6635752 + CmoCh19G005910.1 Cmo19g00591 591
19 6635941 6638525 - CmoCh19G005920.1 Cmo19g00592 592
2 6935962 6942063 - CmPI595203_02g006790.1 Cmu02g0679 679
2 6974869 6975570 - CmPI595203_02g006830.1 Cmu02g0683 683
2 6999665 7001052 + CmPI595203_02g006840.1 Cmu02g0684 684
3 28850130 28852412 + Conep03aG0150400.1 Cone3ag1005 1005
8 9844139 9846399 + Conep08aG0113300.1 Cone8ag1102 1102
10 7095481 7097621 + Conep10aG0105000.1 Cone10ag1023 1023
12 8802426 8804620 + Conep12aG0110000.1 Cone12ag1066 1066
14 1636680 1640764 - Cp4.1LG14g04390.1 Cpe14g00280 280
15 5662053 5663616 - Cp4.1LG15g04580.1 Cpe15g00459 459
15 5665779 5666585 + Cp4.1LG15g04480.1 Cpe15g00460 460
15 5674271 5679736 + Cp4.1LG15g04680.1 Cpe15g00463 463
15 5680575 5682854 - Cp4.1LG15g04740.1 Cpe15g00464 464
2 7554028 7561961 - CrPI670011_02g009980.1 Cre02g0998 998
2 7596502 7597203 - CrPI670011_02g010020.1 Cre02g1002 1002
2 7622252 7623665 + CrPI670011_02g010030.1 Cre02g1003 1003
7 5111767 5122568 - CsaV3_7G008160.1 Csa07g00717 717
3 6463258 6463977 + Lsi03G005370.1 Lsi03g00537 537
3 6480082 6486056 - Lsi03G005400.1 Lsi03g00540 540
3 6520437 6521591 + Lsi03G005430.1 Lsi03g00543 543
3 6579193 6580807 + Lsi03G005450.1 Lsi03g00545 545
3 6338113 6339894 + Vvi3g636 Vvi3g636 636
3 6356813 6364398 - Vvi3g637 Vvi3g637 637
3 6375066 6375457 + Vvi3g638 Vvi3g638 638
3 6384728 6388220 + Vvi3g639 Vvi3g639 639
3 6388279 6390420 + Vvi3g640 Vvi3g640 640
3 6391620 6395007 + Vvi3g641 Vvi3g641 641
3 6398080 6398768 + Vvi3g642 Vvi3g642 642
3 6399869 6405760 - Vvi3g643 Vvi3g643 643
3 6406133 6406946 - Vvi3g644 Vvi3g644 644
3 6415507 6420526 + Vvi3g645 Vvi3g645 645
       

DecoBrowse