Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1309 . Blo12g00269 . . . . . . . . . . Car06g01383 . Sed12g0673 . . Bhi01g02620 Tan10g1229 Cmetu07g0452 . Hepe05g1284 . Lcy11g1240 . . . . . . . Cone14ag0624 . Cone18ag0866 . . . . . . Blo07g00156 . . . . . . . Cmo06g01626 . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi5g1310 . . . . . Bpe14g00784 . . . . . . Car06g01425 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda13g00544 . . . . . Cmo06g01673 . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi5g1311 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi5g1312 . . . . . Bpe14g00785 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda13g00543 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi5g1313 Blo01g00183 . . . . . . Bma05g01158 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe05g00965 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi5g1314 . Blo12g00271 Bda03g00968 . Bpe04g00893 . Bma04g00860 . . Cmo17g00601 . . . . . . . . . . . . . . Cla06g00099 Cam06g0116 . Cco06g0110 Clacu06g0112 Cmu06g0110 Cre06g0880 . Cone15ag0632 . . . . . . . . . . . . . . . . . . Cma17g00616 . Car17g00582 . . Bhi12g02476 . . . Hepe03g1095 . . . . . . . . . . . . Cme11g02439
Vvi5g1315 . . Bda03g00967 . . . . . Cmo08g00193 . . . . . . . . . . . . . . . Cla06g00100 Cam06g0115 Cec06g0112 Cco06g0111 Clacu06g0113 Cmu06g0111 Cre06g0881 Cone14ag0623 Cone15ag0631 . . . . . . . . . . . . . . Sed07g0072 . . . . Car08g00172 . . . Bhi12g02475 Tan06g1535 Cmetu11g0607 . . . . . . . . . . . . . . Cme11g02438
Vvi5g1316 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi5g1317 . . . . . . . . Cmo08g00192 . . . . . . . . . . . . . . . Cla06g00101 Cam06g0114 Cec06g0113 Cco06g0112 Clacu06g0114 Cmu06g0112 Cre06g0882 . . . . . . . . . . . . . . . . Sed09g0151 . . . . Car08g00170 . . Cpe17g01080 Bhi12g02474 Tan06g2240 Cmetu05g1545 Lac12g1976 . . Lcy13g0854 . . . . . . . . . . Cme11g02437
Vvi5g1318 . . . . . Bpe14g00786 . . . . . . Car06g01426 . . . Cpe03g01210 . . . . . . . . . . . . . . Cone14ag0622 Cone15ag0630 . . . . . . . . . Bda13g00542 . . . . . Cmo06g01674 . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 616 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
3 8753168 8757286 - Bda016977.1 Bda03g00967 967
3 8761812 8763567 + Bda016978.1 Bda03g00968 968
13 6422864 6424981 - Bda001453.1 Bda13g00542 542
13 6426963 6428576 - Bda001454.1 Bda13g00543 543
13 6429767 6438400 + Bda032858 Bda13g00544 544
1 64898646 64900714 + XM_039042373.1 Bhi01g02620 2620
12 77622999 77632961 - XM_039019561.1 Bhi12g02474 2474
12 77641750 77645873 - XM_039050609.1 Bhi12g02475 2475
12 77752241 77759468 + XM_039020295.1 Bhi12g02476 2476
1 2544509 2545495 + BLOR00183 Blo01g00183 183
7 2043138 2044297 + BLOR18088 Blo07g00156 156
12 16143827 16144766 - BLOR04288 Blo12g00269 269
12 16171131 16172122 - BLOR04290 Blo12g00271 271
4 11006527 11014716 - Bma019410.1 Bma04g00860 860
5 50646829 50647838 + Bma031232 Bma05g01158 1158
4 5998015 6002777 + Bpe015556.1 Bpe04g00893 893
5 22530649 22531679 + Bpe018377.1 Bpe05g00965 965
14 5955852 5959432 - Bpe014162.1 Bpe14g00784 784
14 5961503 5962232 + Bpe014163.1 Bpe14g00785 785
14 5964541 5966498 + Bpe014164.1 Bpe14g00786 786
6 3112187 3120431 - CaPI482276_06g001140.1 Cam06g0114 114
6 3120490 3126810 - CaPI482276_06g001150.1 Cam06g0115 115
6 3127298 3135998 + CaPI482276_06g001160.1 Cam06g0116 116
6 9938736 9941408 + Carg15493-RA Car06g01383 1383
6 10164514 10170184 - Carg15450-RA Car06g01425 1425
6 10170343 10172628 + Carg15449-RA Car06g01426 1426
8 1035498 1043876 - Carg05015-RA Car08g00170 170
8 1044672 1048149 - Carg05017-RA Car08g00172 172
17 5555050 5559378 - Carg18915-RA Car17g00582 582
6 1017308 1026013 - CcPI632755_06g001100.1 Cco06g0110 110
6 1026288 1030221 + CcPI632755_06g001110.1 Cco06g0111 111
6 1032687 1041015 + CcPI632755_06g001120.1 Cco06g0112 112
6 1039324 1048027 - CePI673135_06g001120.1 Cec06g0112 112
6 1048408 1062251 + CePI673135_06g001130.1 Cec06g0113 113
6 1205342 1214057 - ClG42_06g0011200.10 Clacu06g0112 112
6 1214482 1220716 + ClG42_06g0011300.10 Clacu06g0113 113
6 1220734 1231110 + ClG42_06g0011400.10 Clacu06g0114 114
6 1037705 1048256 - ClCG06G001070.1 Cla06g00099 99
6 1048613 1052547 + ClCG06G001080.2 Cla06g00100 100
6 1053926 1063355 + ClCG06G001090.2 Cla06g00101 101
17 5252434 5257516 - CmaCh17G006160.1 Cma17g00616 616
11 31148217 31156413 - MELO3C022426.2.1 Cme11g02437 2437
11 31157068 31160695 - MELO3C022427.2.1 Cme11g02438 2438
11 31160492 31163655 + MELO3C022428.2.1 Cme11g02439 2439
5 10101520 10103582 + PI0023459.1 Cmetu05g1545 1545
7 2996274 2997778 - PI0025157.1 Cmetu07g0452 452
11 854675 858018 + PI0008280.1 Cmetu11g0607 607
6 11338205 11342185 + CmoCh06G016260.1 Cmo06g01626 1626
6 11574597 11580732 - CmoCh06G016730.1 Cmo06g01673 1673
6 11580731 11582923 + CmoCh06G016740.1 Cmo06g01674 1674
8 1113569 1121766 - CmoCh08G001920.1 Cmo08g00192 192
8 1122156 1126210 - CmoCh08G001930.1 Cmo08g00193 193
17 6378181 6380611 - CmoCh17G006010.1 Cmo17g00601 601
6 1000729 1009453 - CmPI595203_06g001100.1 Cmu06g0110 110
6 1009877 1013830 + CmPI595203_06g001110.1 Cmu06g0111 111
6 1016150 1024304 + CmPI595203_06g001120.1 Cmu06g0112 112
14 3119132 3122605 - Conep14aG0063600.1 Cone14ag0622 622
14 3124863 3127714 - Conep14aG0063700.1 Cone14ag0623 623
14 3127981 3132389 + Conep14aG0063800.1 Cone14ag0624 624
15 3301253 3302542 - Conep15aG0064300.1 Cone15ag0630 630
15 3304598 3307034 - Conep15aG0064400.1 Cone15ag0631 631
15 3307342 3310393 + Conep15aG0064500.1 Cone15ag0632 632
18 5978717 5981384 + Conep18aG0089200.1 Cone18ag0866 866
3 9884324 9888284 - Cp4.1LG03g13040.1 Cpe03g01210 1210
17 8198801 8205968 - Cp4.1LG17g10840.1 Cpe17g01080 1080
6 2096427 2105104 - CrPI670011_06g008800.1 Cre06g0880 880
6 2105364 2111635 + CrPI670011_06g008810.1 Cre06g0881 881
6 2111694 2119956 + CrPI670011_06g008820.1 Cre06g0882 882
3 61808600 61822553 - Hsped.03g10950.1 Hepe03g1095 1095
5 60545688 60556114 - Hsped.05g12840.1 Hepe05g1284 1284
12 36659710 36668327 + Lag0016348.1 Lac12g1976 1976
11 35309802 35312129 - Maker00005250 Lcy11g1240 1240
13 14846649 14861634 - Maker00026219 Lcy13g0854 854
7 815906 820523 + Sed0014142.2 Sed07g0072 72
9 1163286 1164418 + Sed0002491.1 Sed09g0151 151
12 4020038 4023560 - Sed0008422.2 Sed12g0673 673
6 22359671 22364114 - Tan0009187.1 Tan06g1535 1535
6 73158969 73160218 + Tan0016717.1 Tan06g2240 2240
10 13178171 13180587 + Tan0022844.1 Tan10g1229 1229
5 23676503 23677910 - Vvi5g1309 Vvi5g1309 1309
5 23679890 23690900 - Vvi5g1310 Vvi5g1310 1310
5 23693566 23695945 - Vvi5g1311 Vvi5g1311 1311
5 23697142 23700589 + Vvi5g1312 Vvi5g1312 1312
5 23707920 23710490 - Vvi5g1313 Vvi5g1313 1313
5 23719525 23724684 - Vvi5g1314 Vvi5g1314 1314
5 23726304 23741196 + Vvi5g1315 Vvi5g1315 1315
5 23741224 23764340 - Vvi5g1316 Vvi5g1316 1316
5 23764863 23781962 + Vvi5g1317 Vvi5g1317 1317
5 23782694 23787924 + Vvi5g1318 Vvi5g1318 1318
       

DecoBrowse