Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g642 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g643 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g644 . . . . . . Bma07g00957 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo19g00477 . . . . . Cpe15g00358 . . . . . . . . . . . . . . . . . .
Vvi2g645 . . . . . . Bma07g00956 . . . . . . . . . . . . . . . . . Cla10g00174 Cam10g0175 Cec10g0183 Cco10g0184 Clacu10g0179 Cmu10g1026 Cre10g0431 . . . . . . . . . . . . . . . . . . Cmo19g00476 . . . . . Cpe15g00357 . . . . . . . . . . . . . . . . . .
Vvi2g646 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g00186 . .
Vvi2g647 . . . . . . Bma07g00954 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda07g00105 . . . . . . . Cmo19g00475 . . . . . Cpe15g00356 . . . . . . . . . . . . . . . . . .
Vvi2g648 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g649 . . . . . . Bma07g00952 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda09g00703 . . . . . . Cmo19g00474 . . . . . Cpe15g00355 . . . . . . . . . . . . . . . . . .
Vvi2g650 . . . . . . Bma07g00950 . . . . . Car02g01359 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo19g00472 . . . . . Cpe15g00353 . . . . . . . . . . . . . . . Csa03g04630 . .
Vvi2g651 . . . . . . . Bma14g00143 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe11g00345 . . . Cmo02g01644 . . . . . . Cpe15g00352 . . . . . . . Cla09g01155 Cam09g1216 Cec09g1237 Cco09g1259 . . Cre09g1176 . . . .
   
Previous Page 205 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
7 1289622 1291625 - Bda025166.1 Bda07g00105 105
9 11184928 11188633 - Bda031368.1 Bda09g00703 703
7 35978928 35980095 + Bma026085.1 Bma07g00950 950
7 36050585 36054613 - Bma026087.1 Bma07g00952 952
7 36083788 36084276 + Bma026089.1 Bma07g00954 954
7 36137548 36139183 + Bma031389 Bma07g00956 956
7 36142795 36144313 - Bma026093.2 Bma07g00957 957
14 2043877 2046485 - Bma010549.1 Bma14g00143 143
11 2508358 2510939 + Bpe003719.1 Bpe11g00345 345
9 13549192 13554707 + CaPI482276_09g012160.1 Cam09g1216 1216
10 3368865 3371486 - CaPI482276_10g001750.1 Cam10g0175 175
2 9008807 9010049 - Carg08826-RA Car02g01359 1359
9 13347170 13352690 + CcPI632755_09g012590.1 Cco09g1259 1259
10 1800687 1803181 - CcPI632755_10g001840.1 Cco10g0184 184
9 13458746 13464270 + CePI673135_09g012370.1 Cec09g1237 1237
10 1825315 1827489 - CePI673135_10g001830.1 Cec10g0183 183
10 2104204 2106692 - ClG42_10g0017900.10 Clacu10g0179 179
9 13485940 13491456 + ClCG09G012180.2 Cla09g01155 1155
10 1861055 1866761 - ClCG10G001740.2 Cla10g00174 174
2 9474998 9477557 - CmoCh02G016440.1 Cmo02g01644 1644
19 5642715 5656007 - CmoCh19G004720.1 Cmo19g00472 472
19 5668922 5672032 - CmoCh19G004740.1 Cmo19g00474 474
19 5675457 5678228 + CmoCh19G004750.1 Cmo19g00475 475
19 5686831 5689325 + CmoCh19G004760.1 Cmo19g00476 476
19 5690673 5695174 - CmoCh19G004770.1 Cmo19g00477 477
10 2255134 2257622 - CmPI595203_10g010260.1 Cmu10g1026 1026
15 4736977 4741716 - Cp4.1LG15g03590.1 Cpe15g00352 352
15 4743992 4746433 - Cp4.1LG15g03570.1 Cpe15g00353 353
15 4760082 4763224 - Cp4.1LG15g03550.1 Cpe15g00355 355
15 4767257 4770391 + Cp4.1LG15g03490.1 Cpe15g00356 356
15 4775830 4778505 + Cp4.1LG15g03500.1 Cpe15g00357 357
15 4779732 4785754 - Cp4.1LG15g03600.1 Cpe15g00358 358
9 13574820 13580351 + CrPI670011_09g011760.1 Cre09g1176 1176
10 3219911 3221586 - CrPI670011_10g004310.1 Cre10g0431 431
3 1389841 1396283 - CsaV3_3G001860.1 Csa03g00186 186
3 40225893 40228376 + CsaV3_3G049360.1 Csa03g04630 4630
2 6879276 6882848 + Vvi2g642 Vvi2g642 642
2 6896648 6900386 - Vvi2g643 Vvi2g643 643
2 6915185 6925613 + Vvi2g644 Vvi2g644 644
2 6931446 6937802 - Vvi2g645 Vvi2g645 645
2 6938298 6951193 - Vvi2g646 Vvi2g646 646
2 6975040 6977508 - Vvi2g647 Vvi2g647 647
2 6982110 6987583 + Vvi2g648 Vvi2g648 648
2 6988088 7007000 + Vvi2g649 Vvi2g649 649
2 7008153 7010602 - Vvi2g650 Vvi2g650 650
2 7019467 7043516 + Vvi2g651 Vvi2g651 651
       

DecoBrowse