Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g334 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g335 . . . . . . . . Cmo16g00870 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g336 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g337 . . . . . . . . Cmo16g00871 . . . . . Sed07g2635 . . Bhi09g01975 Tan01g4472 Cmetu04g2261 . Hepe01g1339 Mch11g0247 . . . . . . . . . . . . . . . Cme06g02317 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g338 . . . . . Bpe08g01148 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g01054 . . . . . . . . . . . . . . . . . . . . . . . . . Cla05g01571 Cam05g1679 Cec05g1684 Cco05g1728 Clacu05g1670 Cmu05g1561 Cre05g1679 . . . .
Vvi19g339 . . . . . . . . . . . . . . . Cpe06g00729 . . . . . . . . . . . . . . . . . . . . . . . . . Bda05g00753 . . Bpe03g00818 . Bma14g00370 . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g340 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma07g01321 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g341 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g342 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cpe01g00846 Bhi11g00715 . . . . . . . . . . . . . . . . .
Vvi19g343 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag1114 . . . . . . . . . . . . . . . . . Car04g00873 . . . . . . . . . . . . . . . . . Lsi05g00675 . . .
   
Previous Page 2279 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
5 56003081 56007389 - Bda021902.1 Bda05g00753 753
9 55135582 55137161 + XM_039043535.1 Bhi09g01975 1975
11 18439772 18443385 + XM_039047833.1 Bhi11g00715 715
7 48761327 48762331 + Bma026597.1 Bma07g01321 1321
14 4444240 4446686 + Bma010791.1 Bma14g00370 370
3 28141727 28145637 - Bpe012729.1 Bpe03g00818 818
8 13311337 13312263 + Bpe023273.1 Bpe08g01148 1148
5 25075165 25076376 + CaPI482276_05g016790.1 Cam05g1679 1679
4 5025495 5028866 + Carg00048-RA Car04g00873 873
5 25630366 25631578 + CcPI632755_05g017280.1 Cco05g1728 1728
5 27986496 27987708 + CePI673135_05g016840.1 Cec05g1684 1684
4 15629917 15631719 - Chy4G077720.1 Chy04g01054 1054
5 25253265 25254473 + ClG42_05g0167000.10 Clacu05g1670 1670
5 26667556 26669639 + ClCG05G015130.2 Cla05g01571 1571
6 30572021 30596236 + MELO3C013702.2.1 Cme06g02317 2317
4 2485486 2486444 - PI0001202.1 Cmetu04g2261 2261
16 4644745 4665010 + CmoCh16G008700.1 Cmo16g00870 870
16 4667379 4671169 + CmoCh16G008710.1 Cmo16g00871 871
5 24974815 24976023 + CmPI595203_05g015610.1 Cmu05g1561 1561
15 9112166 9115344 - Conep15aG0114000.1 Cone15ag1114 1114
1 5014963 5018021 + Cp4.1LG01g08420.1 Cpe01g00846 846
6 4563309 4567305 + Cp4.1LG06g07310.1 Cpe06g00729 729
5 28151460 28152649 + CrPI670011_05g016790.1 Cre05g1679 1679
1 78574631 78576292 + Hsped.01g13390.1 Hepe01g1339 1339
5 8937352 8941493 + Lsi05G006750.1 Lsi05g00675 675
11 1553378 1555870 + MC11g_new0053 Mch11g0247 247
7 41834946 41836608 + Sed0008702.1 Sed07g2635 2635
1 110136871 110140093 - Tan0018085.1 Tan01g4472 4472
19 4318578 4320094 + Vvi19g334 Vvi19g334 334
19 4321540 4325220 + Vvi19g335 Vvi19g335 335
19 4330087 4333933 + Vvi19g336 Vvi19g336 336
19 4363233 4364077 + Vvi19g337 Vvi19g337 337
19 4374572 4374938 + Vvi19g338 Vvi19g338 338
19 4401588 4404291 + Vvi19g339 Vvi19g339 339
19 4404334 4405377 + Vvi19g340 Vvi19g340 340
19 4430249 4433793 + Vvi19g341 Vvi19g341 341
19 4466857 4469190 + Vvi19g342 Vvi19g342 342
19 4489358 4490254 + Vvi19g343 Vvi19g343 343
       

DecoBrowse