Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1440 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1206 . . . . . . . Blo17g00155 Blo18g00166 . Bda13g01447 . Bpe14g00408 . Bma02g00190 . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1441 . . . . . . . . . . . . . . Sed11g2306 . . Bhi04g02514 Tan11g0071 Cmetu03g2001 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00772 Cam11g0807 Cec11g0788 Cco11g0794 Clacu11g1051 Cmu11g0912 Cre11g1252 . . . .
Vvi18g1442 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1443 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1444 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1445 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1446 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1447 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1448 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1449 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 2210 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
13 37181139 37184857 - Bda000280.1 Bda13g01447 1447
4 67833005 67839179 - XM_039029205.1 Bhi04g02514 2514
17 1451870 1455510 - BLOR15976 Blo17g00155 155
18 1561359 1565751 - BLOR08654 Blo18g00166 166
2 1744462 1754054 - Bma014647.2 Bma02g00190 190
14 3816309 3819957 + Bpe024977 Bpe14g00408 408
11 10224001 10228581 - CaPI482276_11g008070.1 Cam11g0807 807
11 9051804 9056453 - CcPI632755_11g007940.1 Cco11g0794 794
11 9272406 9276983 - CePI673135_11g007880.1 Cec11g0788 788
11 13072976 13077540 + ClG42_11g0105100.10 Clacu11g1051 1051
11 11097556 11102122 - ClCG11G008080.2 Cla11g00772 772
3 25918439 25923218 - PI0027012.1 Cmetu03g2001 2001
11 12402072 12406636 + CmPI595203_11g009120.1 Cmu11g0912 912
4 10128697 10130765 + Conep04aG0125200.1 Cone4ag1206 1206
11 10887970 10892479 - CrPI670011_11g012520.1 Cre11g1252 1252
11 36098855 36102446 - Sed0007097.1 Sed11g2306 2306
11 899840 905842 + Tan0010720.1 Tan11g0071 71
18 21443286 21459454 + Vvi18g1440 Vvi18g1440 1440
18 21471546 21496811 - Vvi18g1441 Vvi18g1441 1441
18 21551207 21566009 + Vvi18g1442 Vvi18g1442 1442
18 21636038 21636242 + Vvi18g1443 Vvi18g1443 1443
18 21653490 21670070 - Vvi18g1444 Vvi18g1444 1444
18 21687839 21692058 + Vvi18g1445 Vvi18g1445 1445
18 21721611 21721818 + Vvi18g1446 Vvi18g1446 1446
18 21736488 21737241 - Vvi18g1447 Vvi18g1447 1447
18 21737276 21739446 - Vvi18g1448 Vvi18g1448 1448
18 21740706 21742565 + Vvi18g1449 Vvi18g1449 1449
       

DecoBrowse