Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g812 . . Bda06g01232 . . . . . . . . . . . . Cpe14g00997 . . . . . . . . . . . . . . . Cone8ag0544 . . . . . . . . . . . . . . Bma12g00249 . . . . . . Car16g01135 . . . . . . . . . . . . . . . . . . . .
Vvi2g813 . . . . . Bpe07g00246 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g814 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g815 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo03g00895 . Bda07g00064 . . Bpe11g00302 . . . . Cmo19g00219 . . . . . Cpe15g00177 . . . . . . . . . . . . . . . . . .
Vvi2g816 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo03g00896 . Bda07g00063 . . Bpe11g00301 . . . . Cmo19g00217 . . . . . Cpe15g00174 . . . . . . . . . . . . . . . . . .
Vvi2g817 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0518 . . . . . . . . . . . . . . . . . Cmo19g00215 . . . . . Cpe15g00172 . . . . . . . . . . . . . . . . . .
Vvi2g818 . . . . . . . . . . . . Car02g01405 . . . Cpe05g00146 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo02g01694 . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g819 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g820 . . . Bda08g00649 Bpe05g00508 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma05g00693 . . . . . . . . . . . . . . . . . . . . . . . . . . Chy06g02189 .
Vvi2g821 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 222 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
6 42408767 42411012 + Bda023060.1 Bda06g01232 1232
7 886421 887671 - Bda025120.1 Bda07g00063 63
7 890595 891872 + Bda025121.1 Bda07g00064 64
8 6748767 6754195 + Bda029111.2 Bda08g00649 649
3 34952975 34954264 - BLOR12076 Blo03g00895 895
3 34966684 34968700 + BLOR12077 Blo03g00896 896
5 40479777 40485230 - Bma021756.1 Bma05g00693 693
12 3213880 3217789 - Bma007141.1 Bma12g00249 249
5 19265655 19271077 - Bpe017926.1 Bpe05g00508 508
7 1748080 1749807 - Bpe021057.1 Bpe07g00246 246
11 2203922 2205817 - Bpe024749 Bpe11g00301 301
11 2208836 2210102 + Bpe024750 Bpe11g00302 302
2 9240796 9243096 + Carg08872-RA Car02g01405 1405
16 9700462 9704837 + Carg23574-RA Car16g01135 1135
6 26130153 26134351 + Chy6G127170.1 Chy06g02189 2189
2 9712038 9714929 + CmoCh02G016940.1 Cmo02g01694 1694
19 1440133 1443525 - CmoCh19G002150.1 Cmo19g00215 215
19 1448765 1451457 + CmoCh19G002170.1 Cmo19g00217 217
19 1457772 1460868 + CmoCh19G002190.1 Cmo19g00219 219
8 3690341 3693690 - Conep08aG0053900.1 Cone8ag0518 518
8 4012657 4015993 + Conep08aG0056500.1 Cone8ag0544 544
5 764259 768830 - Cp4.1LG05g00370.1 Cpe05g00146 146
14 8406792 8412855 + Cp4.1LG14g09890.1 Cpe14g00997 997
15 1418327 1421643 - Cp4.1LG15g01760.1 Cpe15g00172 172
15 1426395 1428611 + Cp4.1LG15g01710.1 Cpe15g00174 174
15 1447840 1453394 + Cp4.1LG15g01730.1 Cpe15g00177 177
2 13886724 13895243 + Vvi2g812 Vvi2g812 812
2 13919739 13921377 + Vvi2g813 Vvi2g813 813
2 13939742 13940883 - Vvi2g814 Vvi2g814 814
2 13992039 13995847 - Vvi2g815 Vvi2g815 815
2 14011057 14014407 - Vvi2g816 Vvi2g816 816
2 14027836 14031363 - Vvi2g817 Vvi2g817 817
2 14032864 14036930 - Vvi2g818 Vvi2g818 818
2 14046368 14046563 + Vvi2g819 Vvi2g819 819
2 14046627 14071572 - Vvi2g820 Vvi2g820 820
2 14137360 14137814 - Vvi2g821 Vvi2g821 821
       

DecoBrowse