Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g676 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g677 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g678 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g679 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g680 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g681 Blo02g00938 . . Bda08g00672 . . . . . . . . . . . . . . . . . . . . Cla10g01008 Cam10g1031 Cec10g1062 Cco10g1026 Clacu10g1048 Cmu10g1832 Cre10g1204 . . Cone3ag1018 . . . . . . . . . . Bpe05g00481 . . . Cmo04g00492 Cmo16g00350 . . . . Cpe14g00275 Cpe01g00412 Bhi11g01151 . . . . . . . . . . . . . Lsi03g01036 . . Cme07g02168
Vvi3g682 . . . . . Bpe12g00304 . . Cmo19g00574 Cmo11g01412 . . . . . Cpe04g00320 Cpe15g00448 . . . . . . . Cla02g00672 Cam02g0706 Cec02g0719 Cco02g0740 Clacu02g0713 Cmu02g0710 Cre02g1024 . . Cone3ag1020 Cone10ag1036 Lsi03g00566 Csa07g00694 . Cme01g00111 . . Bda15g00835 . . . . Bma08g00454 . . . Cma11g01706 Cma19g00561 . . . . . . . . . . . . . . . . . . . . Chy01g00121 .
Vvi3g683 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g684 Blo02g00937 . Bda06g01208 . Bpe07g00269 . Bma05g00660 Bma12g00278 . . . . . . . . . . . . . . . . Cla10g01005 Cam10g1028 Cec10g1059 Cco10g1023 Clacu10g1045 Cmu10g1829 Cre10g1202 . . Cone3ag1021 Cone10ag1037 . . . . . . . . . Bpe05g00480 . . Sed02g0787 Cmo04g00489 . . . . . . Cpe01g00410 Bhi11g01149 Tan01g0648 Cmetu04g2145 . Hepe07g0425 Mch10g0455 . . . . . . . . Lsi03g01034 . . .
Vvi3g685 . Blo03g00078 Bda06g01207 . Bpe07g00270 . . . . . . . . . . . . . . . . . . . Cla10g01004 Cam10g1027 Cec10g1058 Cco10g1022 Clacu10g1044 Cmu10g1828 Cre10g1201 . . . Cone10ag1038 . . . . . . . . . . . . Sed07g1270 . Cmo16g00347 . . . . Cpe14g00272 Cpe01g00409 Bhi11g01148 Tan01g0647 Cmetu07g2285 . Hepe07g0424 Mch10g0454 . . . . . . . . Lsi03g01032 . . Cme07g02172
   
Previous Page 306 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
6 41918024 41919061 + Bda023026.1 Bda06g01207 1207
6 41919664 41921955 - Bda023027.1 Bda06g01208 1208
8 7076516 7078730 + Bda029134.3 Bda08g00672 672
15 12703938 12705917 - Bda012702.1 Bda15g00835 835
11 33841986 33843966 + XM_039047154.1 Bhi11g01148 1148
11 33844728 33846475 - XM_039047586.1 Bhi11g01149 1149
11 33881976 33884573 + XM_039049033.1 Bhi11g01151 1151
2 36300235 36306826 - BLOR10667 Blo02g00937 937
2 36337785 36345134 - BLOR10668 Blo02g00938 938
3 2676539 2677576 + BLOR11259 Blo03g00078 78
5 38752974 38755375 - Bma021706.1 Bma05g00660 660
8 18539913 18541903 - Bma027584.1 Bma08g00454 454
12 3742038 3744695 + Bma007177.1 Bma12g00278 278
5 19068764 19071168 - Bpe017900.1 Bpe05g00480 480
5 19075463 19077669 - Bpe017901.1 Bpe05g00481 481
7 1940294 1942545 + Bpe021081.1 Bpe07g00269 269
7 1943153 1943734 - Bpe021082.1 Bpe07g00270 270
12 4617860 4619713 + Bpe005550.1 Bpe12g00304 304
2 8349457 8352146 + CaPI482276_02g007060.1 Cam02g0706 706
10 22680882 22681943 + CaPI482276_10g010270.1 Cam10g1027 1027
10 22682598 22683981 - CaPI482276_10g010280.1 Cam10g1028 1028
10 22720944 22724682 - CaPI482276_10g010310.1 Cam10g1031 1031
2 7642408 7645078 + CcPI632755_02g007400.1 Cco02g0740 740
10 21912770 21913852 + CcPI632755_10g010220.1 Cco10g1022 1022
10 21914488 21915863 - CcPI632755_10g010230.1 Cco10g1023 1023
10 21942255 21945944 - CcPI632755_10g010260.1 Cco10g1026 1026
2 7544554 7548042 + CePI673135_02g007190.1 Cec02g0719 719
10 23603717 23604775 + CePI673135_10g010580.1 Cec10g1058 1058
10 23605433 23606808 - CePI673135_10g010590.1 Cec10g1059 1059
10 23631766 23635460 - CePI673135_10g010620.1 Cec10g1062 1062
1 779542 781721 + Chy1G001210.1 Chy01g00121 121
2 7360010 7362686 + ClG42_02g0071300.10 Clacu02g0713 713
10 22342983 22344044 + ClG42_10g0104400.10 Clacu10g1044 1044
10 22344701 22346081 - ClG42_10g0104500.10 Clacu10g1045 1045
10 22372833 22376486 - ClG42_10g0104800.10 Clacu10g1048 1048
2 7703190 7706530 + ClCG02G006700.1 Cla02g00672 672
10 23373076 23374137 + ClCG10G010530.1 Cla10g01004 1004
10 23374450 23376263 - ClCG10G010540.1 Cla10g01005 1005
10 23406967 23410619 - ClCG10G010570.2 Cla10g01008 1008
11 11298794 11302187 - CmaCh11G017060.1 Cma11g01706 1706
19 6373910 6378242 - CmaCh19G005610.1 Cma19g00561 561
1 761358 764703 + MELO3C018510.2.1 Cme01g00111 111
7 26099827 26103356 + MELO3C017986.2.1 Cme07g02168 2168
7 26115387 26117123 - MELO3C017990.2.1 Cme07g02172 2172
4 7258029 7265100 + PI0029130.1 Cmetu04g2145 2145
7 511022 514581 + PI0017667.1 Cmetu07g2285 2285
4 2442875 2443459 - CmoCh04G004890.1 Cmo04g00489 489
4 2450303 2453717 - CmoCh04G004920.1 Cmo04g00492 492
11 9917564 9920616 + CmoCh11G014120.1 Cmo11g01412 1412
16 1603221 1604291 + CmoCh16G003470.1 Cmo16g00347 347
16 1613368 1617037 - CmoCh16G003500.1 Cmo16g00350 350
19 6551327 6554824 - CmoCh19G005740.1 Cmo19g00574 574
2 7265253 7267930 + CmPI595203_02g007100.1 Cmu02g0710 710
10 22957778 22958839 + CmPI595203_10g018280.1 Cmu10g1828 1828
10 22959495 22960875 - CmPI595203_10g018290.1 Cmu10g1829 1829
10 22987604 22991256 - CmPI595203_10g018320.1 Cmu10g1832 1832
3 29004265 29006485 + Conep03aG0151700.1 Cone3ag1018 1018
3 29009037 29010647 + Conep03aG0151900.1 Cone3ag1020 1020
3 29010937 29013837 + Conep03aG0152000.1 Cone3ag1021 1021
10 7216007 7217829 + Conep10aG0106300.1 Cone10ag1036 1036
10 7224047 7226944 + Conep10aG0106400.1 Cone10ag1037 1037
10 7227483 7232501 - Conep10aG0106500.1 Cone10ag1038 1038
1 2370289 2372024 + Cp4.1LG01g02660.1 Cpe01g00409 409
1 2372399 2374154 - Cp4.1LG01g02550.1 Cpe01g00410 410
1 2379748 2383533 - Cp4.1LG01g02520.1 Cpe01g00412 412
4 3938680 3942272 + Cp4.1LG04g07710.1 Cpe04g00320 320
14 1576208 1579445 + Cp4.1LG14g04460.1 Cpe14g00272 272
14 1586492 1591816 - Cp4.1LG14g04330.1 Cpe14g00275 275
15 5595706 5599951 - Cp4.1LG15g04570.1 Cpe15g00448 448
2 7890794 7893461 + CrPI670011_02g010240.1 Cre02g1024 1024
10 24661360 24662421 + CrPI670011_10g012010.1 Cre10g1201 1201
10 24663077 24664456 - CrPI670011_10g012020.1 Cre10g1202 1202
10 24684561 24688258 - CrPI670011_10g012040.1 Cre10g1204 1204
7 4974916 4981151 - CsaV3_7G007930.1 Csa07g00694 694
7 4405427 4407441 + Hsped.07g04240.1 Hepe07g0424 424
7 4407834 4409719 - Hsped.07g04250.1 Hepe07g0425 425
3 6837849 6841376 + Lsi03G005660.1 Lsi03g00566 566
3 19886097 19887676 + Lsi03G010320.1 Lsi03g01032 1032
3 19888329 19889966 - Lsi03G010340.1 Lsi03g01034 1034
3 19910419 19912616 - Lsi03G010360.1 Lsi03g01036 1036
10 2972514 2973563 + MC10g0370 Mch10g0454 454
10 2974834 2976369 - MC10g0371 Mch10g0455 455
2 45524742 45530668 + Sed0018982.2 Sed02g0787 787
7 9551851 9553770 + Sed0015870.2 Sed07g1270 1270
1 6195308 6197370 + Tan0019452.2 Tan01g0647 647
1 6197693 6199534 - Tan0020958.1 Tan01g0648 648
3 6892317 6895634 - Vvi3g676 Vvi3g676 676
3 6905701 6914851 + Vvi3g677 Vvi3g677 677
3 6917798 6921320 - Vvi3g678 Vvi3g678 678
3 6923377 6930220 + Vvi3g679 Vvi3g679 679
3 6975808 6984113 + Vvi3g680 Vvi3g680 680
3 6987236 6990594 + Vvi3g681 Vvi3g681 681
3 6995095 6998539 + Vvi3g682 Vvi3g682 682
3 6998807 6999663 - Vvi3g683 Vvi3g683 683
3 7035491 7039129 + Vvi3g684 Vvi3g684 684
3 7039333 7043015 - Vvi3g685 Vvi3g685 685
       

DecoBrowse