Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g686 . . . . . . . . Cmo19g00573 . . . . . . . Cpe15g00447 . . . . . . . Cla02g00673 Cam02g0707 Cec02g0720 Cco02g0741 Clacu02g0714 Cmu02g0711 Cre02g1025 Cone12ag1053 Cone8ag1086 . . Lsi03g00567 Csa07g00693 . Cme01g00112 . . . Bda14g01471 . . Bma03g01381 . . . . . Cma19g00560 . Car19g00418 . . . . . . . . . . . . . . . . . . Chy01g00122 .
Vvi3g687 . Blo03g00077 Bda06g01206 . Bpe07g00271 . . Bma12g00279 . . . . . . . . . . . . . . . . Cla10g01003 Cam10g1026 Cec10g1057 Cco10g1021 Clacu10g1043 Cmu10g1827 Cre10g1200 . . . . . . . . . . . . . . . . Sed13g0451 Cmo04g00488 . . . . . . Cpe01g00408 Bhi11g01145 Tan01g0645 Cmetu07g2075 . Hepe07g0423 Mch10g0453 . . . . . . . . Lsi03g01031 . . Cme07g02173
Vvi3g688 . . . . . . Bma05g00656 . . . . . . . . . . . . . . . . . Cla10g01002 Cam10g1025 Cec10g1056 Cco10g1020 Clacu10g1042 Cmu10g1826 Cre10g1199 . . Cone3ag1022 . . . . . . . . . . . . . Sed13g0450 Cmo04g00487 . . . . . . Cpe01g00407 Bhi11g01143 Tan01g0644 Cmetu07g0339 . Hepe07g0422 Mch10g0452 . . . . . . . . . . . Cme07g02174
Vvi3g689 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g690 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g691 Blo02g00934 Blo03g00075 Bda06g01204 . Bpe07g00273 . Bma05g00655 . Cmo19g00571 Cmo11g01414 . . . . . Cpe04g00322 Cpe15g00445 . . . . . . . Cla02g00676 Cam02g0709 Cec02g0721 Cco02g0742 Clacu02g0716 Cmu02g0713 Cre02g1027 . . Cone3ag1024 Cone10ag1039 Lsi03g00569 Csa07g00691 . Cme01g00114 . . . . . Bpe05g00476 . . . . . Cma11g01704 Cma19g00558 Car11g01138 Car19g00416 . . . . . . . . . . . . . . . . . . Chy01g00125 .
Vvi3g692 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g693 Blo02g00933 Blo03g00074 Bda06g01203 Bda08g00675 Bpe07g00274 . . Bma12g00281 . . . . . . . . . . . . . . . . Cla10g01000 Cam10g1022 Cec10g1053 Cco10g1018 Clacu10g1040 Cmu10g1824 Cre10g1197 . . Cone3ag1025 Cone10ag1040 . . . . . . . . . Bpe05g00475 . . . Cmo04g00485 Cmo16g00344 . . . . Cpe14g00271 Cpe01g00406 Bhi11g01141 . . . . Mch10g0450 . . . . . . . . Lsi03g01029 . . Cme07g02176
Vvi3g694 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g695 Blo02g00932 . . Bda08g00678 . . Bma05g00652 . . Cmo11g01416 . . . . . Cpe04g00324 . . . . . . . . . . . . . . . . . . . . Csa07g00689 . Cme01g00116 . . . . . Bpe05g00474 . . . . . Cma11g01702 . Car11g01140 . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 307 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
6 41850425 41853454 + Bda023022.1 Bda06g01203 1203
6 41853882 41864201 - Bda023023.1 Bda06g01204 1204
6 41897317 41906503 - Bda023025.1 Bda06g01206 1206
8 7124228 7127452 - Bda034016 Bda08g00675 675
8 7208744 7215584 + Bda034019 Bda08g00678 678
14 20939575 20941234 - Bda011228.1 Bda14g01471 1471
11 33813498 33819554 + XM_039050434.1 Bhi11g01141 1141
11 33833976 33836779 + XM_039049051.1 Bhi11g01143 1143
11 33837036 33840677 - XM_039049047.1 Bhi11g01145 1145
2 36116062 36126455 - BLOR10662 Blo02g00932 932
2 36192749 36196865 + BLOR10663 Blo02g00933 933
2 36204348 36215601 - BLOR10664 Blo02g00934 934
3 2640610 2643879 + BLOR11255 Blo03g00074 74
3 2651419 2657653 - BLOR11256 Blo03g00075 75
3 2667419 2669380 - BLOR11258 Blo03g00077 77
3 33036901 33038560 - Bma017949.1 Bma03g01381 1381
5 38194347 38198002 - Bma021693.1 Bma05g00652 652
5 38435762 38442009 - Bma021697.1 Bma05g00655 655
5 38557906 38559082 + Bma021699.1 Bma05g00656 656
12 3748670 3751986 + Bma007178.1 Bma12g00279 279
12 3783292 3784793 - Bma007179.2 Bma12g00281 281
5 19036331 19041394 - Bpe017894.1 Bpe05g00474 474
5 19047351 19055890 + Bpe017895.4 Bpe05g00475 475
5 19056676 19062765 - Bpe017896.1 Bpe05g00476 476
7 1947009 1950314 + Bpe021083.1 Bpe07g00271 271
7 1954645 1964500 + Bpe021084.1 Bpe07g00273 273
7 1964944 1967839 - Bpe021085.1 Bpe07g00274 274
2 8353586 8355840 - CaPI482276_02g007070.1 Cam02g0707 707
2 8384812 8396499 + CaPI482276_02g007090.1 Cam02g0709 709
10 22624053 22638315 + CaPI482276_10g010220.1 Cam10g1022 1022
10 22667060 22669085 + CaPI482276_10g010250.1 Cam10g1025 1025
10 22669766 22672904 - CaPI482276_10g010260.1 Cam10g1026 1026
11 9120104 9132030 + Carg23032-RA Car11g01138 1138
11 9140628 9145096 + Carg23034-RA Car11g01140 1140
19 6020794 6030231 - Carg16338-RA Car19g00416 416
19 6040775 6043386 + Carg16340-RA Car19g00418 418
2 7646519 7648773 - CcPI632755_02g007410.1 Cco02g0741 741
2 7679266 7690861 + CcPI632755_02g007420.1 Cco02g0742 742
10 21864758 21869201 + CcPI632755_10g010180.1 Cco10g1018 1018
10 21898734 21900764 + CcPI632755_10g010200.1 Cco10g1020 1020
10 21901451 21904601 - CcPI632755_10g010210.1 Cco10g1021 1021
2 7548688 7550940 - CePI673135_02g007200.1 Cec02g0720 720
2 7582098 7593654 + CePI673135_02g007210.1 Cec02g0721 721
10 23538970 23553185 + CePI673135_10g010530.1 Cec10g1053 1053
10 23589949 23591972 + CePI673135_10g010560.1 Cec10g1056 1056
10 23592653 23595736 - CePI673135_10g010570.1 Cec10g1057 1057
1 783128 785384 - Chy1G001220.1 Chy01g00122 122
1 798990 809897 + Chy1G001250.1 Chy01g00125 125
2 7364144 7366400 - ClG42_02g0071400.10 Clacu02g0714 714
2 7395949 7407739 + ClG42_02g0071600.10 Clacu02g0716 716
10 22294985 22309230 + ClG42_10g0104000.10 Clacu10g1040 1040
10 22329320 22331337 + ClG42_10g0104200.10 Clacu10g1042 1042
10 22332017 22335149 - ClG42_10g0104300.10 Clacu10g1043 1043
2 7707295 7710009 - ClCG02G006710.1 Cla02g00673 673
2 7741691 7756700 + ClCG02G006740.1 Cla02g00676 676
10 23334613 23339511 + ClCG10G010500.1 Cla10g01000 1000
10 23359365 23361725 + ClCG10G010510.2 Cla10g01002 1002
10 23362029 23365309 - ClCG10G010520.1 Cla10g01003 1003
11 11248774 11265146 - CmaCh11G017020.1 Cma11g01702 1702
11 11275218 11286825 - CmaCh11G017040.1 Cma11g01704 1704
19 6351182 6361303 - CmaCh19G005580.1 Cma19g00558 558
19 6371808 6375555 + CmaCh19G005600.1 Cma19g00560 560
1 765337 768277 - MELO3C018511.2.1 Cme01g00112 112
1 780780 791223 + MELO3C018513.2.1 Cme01g00114 114
1 803321 807581 + MELO3C018514.2.1 Cme01g00116 116
7 26117425 26120448 + MELO3C017991.2.1 Cme07g02173 2173
7 26121142 26123558 - MELO3C017992.2.1 Cme07g02174 2174
7 26126847 26132244 - MELO3C017994.2.1 Cme07g02176 2176
7 505547 508001 + PI0004194.1 Cmetu07g0339 339
7 508789 511089 - PI0025317.1 Cmetu07g2075 2075
4 2426182 2431435 + CmoCh04G004850.1 Cmo04g00485 485
4 2434249 2442517 + CmoCh04G004870.1 Cmo04g00487 487
4 2436837 2440263 - CmoCh04G004880.1 Cmo04g00488 488
11 9936711 9948844 + CmoCh11G014140.1 Cmo11g01414 1414
11 9957496 9961908 + CmoCh11G014160.1 Cmo11g01416 1416
16 1594661 1600003 + CmoCh16G003440.1 Cmo16g00344 344
19 6527967 6537927 - CmoCh19G005710.1 Cmo19g00571 571
19 6548496 6551188 + CmoCh19G005730.1 Cmo19g00573 573
2 7269391 7271647 - CmPI595203_02g007110.1 Cmu02g0711 711
2 7301156 7312933 + CmPI595203_02g007130.1 Cmu02g0713 713
10 22909804 22924050 + CmPI595203_10g018240.1 Cmu10g1824 1824
10 22944109 22946126 + CmPI595203_10g018260.1 Cmu10g1826 1826
10 22946806 22949940 - CmPI595203_10g018270.1 Cmu10g1827 1827
3 29020821 29024526 - Conep03aG0152100.1 Cone3ag1022 1022
3 29034875 29039947 + Conep03aG0152300.1 Cone3ag1024 1024
3 29040245 29045685 - Conep03aG0152400.1 Cone3ag1025 1025
8 9788486 9790774 + Conep08aG0111700.1 Cone8ag1086 1086
10 7235475 7240683 + Conep10aG0106600.1 Cone10ag1039 1039
10 7240981 7245747 - Conep10aG0106700.1 Cone10ag1040 1040
12 8752147 8754419 + Conep12aG0108700.1 Cone12ag1053 1053
1 2355192 2360950 + Cp4.1LG01g02620.1 Cpe01g00406 406
1 2363706 2366309 + Cp4.1LG01g02650.1 Cpe01g00407 407
1 2366365 2369842 - Cp4.1LG01g02560.1 Cpe01g00408 408
4 3957928 3969835 + Cp4.1LG04g07690.1 Cpe04g00322 322
4 3979125 3983728 + Cp4.1LG04g07570.1 Cpe04g00324 324
14 1569654 1574318 + Cp4.1LG14g04410.1 Cpe14g00271 271
15 5572680 5582386 - Cp4.1LG15g04540.1 Cpe15g00445 445
15 5593498 5597164 + Cp4.1LG15g04450.1 Cpe15g00447 447
2 7894912 7897166 - CrPI670011_02g010250.1 Cre02g1025 1025
2 7929880 7941708 + CrPI670011_02g010270.1 Cre02g1027 1027
10 24593776 24607888 + CrPI670011_10g011970.1 Cre10g1197 1197
10 24648126 24650151 + CrPI670011_10g011990.1 Cre10g1199 1199
10 24650832 24653971 - CrPI670011_10g012000.1 Cre10g1200 1200
7 4936349 4941454 - CsaV3_7G007880.1 Csa07g00689 689
7 4950201 4963216 - CsaV3_7G007900.1 Csa07g00691 691
7 4973658 4977296 + CsaV3_7G007920.1 Csa07g00693 693
7 4395613 4398084 + Hsped.07g04220.1 Hepe07g0422 422
7 4399180 4405499 - Hsped.07g04230.1 Hepe07g0423 423
3 6842130 6844544 - Lsi03G005670.1 Lsi03g00567 567
3 6869878 6872005 + Lsi03G005690.1 Lsi03g00569 569
3 19861510 19866651 + Lsi03G010290.1 Lsi03g01029 1029
3 19879320 19882558 - Lsi03G010310.1 Lsi03g01031 1031
10 2954347 2960717 + MC10g0366 Mch10g0450 450
10 2964388 2966909 + MC10g0368 Mch10g0452 452
10 2965978 2969250 - MC10g0369 Mch10g0453 453
13 3065241 3067336 + Sed0000346.1 Sed13g0450 450
13 3068037 3071670 - Sed0007262.1 Sed13g0451 451
1 6184300 6186708 + Tan0017137.1 Tan01g0644 644
1 6186805 6190592 - Tan0008119.1 Tan01g0645 645
3 7044853 7051148 - Vvi3g686 Vvi3g686 686
3 7051149 7055710 + Vvi3g687 Vvi3g687 687
3 7055779 7059118 - Vvi3g688 Vvi3g688 688
3 7065043 7065631 - Vvi3g689 Vvi3g689 689
3 7074727 7076677 + Vvi3g690 Vvi3g690 690
3 7082070 7098157 + Vvi3g691 Vvi3g691 691
3 7098159 7099838 - Vvi3g692 Vvi3g692 692
3 7103280 7114344 - Vvi3g693 Vvi3g693 693
3 7125277 7126323 - Vvi3g694 Vvi3g694 694
3 7137411 7143834 + Vvi3g695 Vvi3g695 695
       

DecoBrowse