Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g696 Blo02g00931 . . Bda08g00679 . . Bma05g00651 . . . . . . . . . . . . . . . . . Cla10g00999 . . Cco10g1017 . . . Cone12ag1050 Cone8ag1082 . . . . . . . . . . . Bpe05g00473 . . Sed11g0819 Cmo04g00484 Cmo16g00343 . . . . Cpe14g00270 Cpe01g00405 Bhi11g01139 Tan01g0641 Cmetu09g1555 . Hepe07g0419 Mch10g0449 . . . . . . . . Lsi03g01027 . . Cme07g02177
Vvi3g697 . . . . . . . . Cmo19g00569 Cmo11g01418 . . . . . Cpe04g00325 Cpe15g00443 Bhi05g01042 . . . . . . Cla02g00678 Cam02g0711 Cec02g0724 Cco02g0746 Clacu02g0720 Cmu02g0717 Cre02g1030 Cone12ag1049 Cone8ag1081 . . Lsi03g00572 Csa07g00688 . Cme01g00117 . . . . . . . . . . . . Cma19g00556 Car11g01141 Car19g00414 . . . . . . . . . . . . . . . . . . Chy01g00127 .
Vvi3g698 . . . Bda08g00680 . . Bma05g00650 . . Cmo11g01419 . . . . . Cpe04g00326 Cpe15g00442 . . . . . . . Cla02g00679 Cam02g0712 Cec02g0725 Cco02g0747 Clacu02g0721 Cmu02g0719 Cre02g1031 Cone12ag1048 . . Cone10ag1041 Lsi03g00573 Csa07g00687 . Cme01g00118 . . . . . Bpe05g00472 . . Sed07g1264 . Cmo16g00342 Cma11g01701 Cma19g00554 Car11g01142 Car19g00413 Cpe14g00269 Cpe01g00404 Bhi11g01138 Tan01g0640 Cmetu07g1092 . Hepe07g0418 Mch10g0448 . . . . . . . . Lsi03g01026 . Chy01g00128 Cme07g02178
Vvi3g699 . Blo03g00073 Bda06g01202 . Bpe07g00275 . . Bma12g00282 Cmo19g00568 Cmo11g01420 . . . . . Cpe04g00327 Cpe15g00440 . . . . . . . Cla02g00680 Cam02g0713 Cec02g0726 Cco02g0748 Clacu02g0722 Cmu02g0720 Cre02g1032 Cone12ag1047 Cone8ag1080 Cone3ag1026 Cone10ag1042 Lsi03g00574 Csa07g00686 . Cme01g00119 . . . . . . . . Sed14g1676 Cmo04g00482 . Cma11g01700 Cma19g00553 Car11g01143 Car19g00412 . Cpe01g00403 Bhi11g01137 Tan01g0639 Cmetu07g1041 . . Mch10g0447 . . . . . . . . Lsi03g01025 . Chy01g00129 Cme07g02179
Vvi3g700 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g701 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1046 Cone8ag1079 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g702 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g703 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g704 . . . . . . . . Cmo19g00565 . . . . . . . Cpe15g00438 . . . . . . . Cla02g00682 Cam02g0716 Cec02g0729 Cco02g0751 Clacu02g0725 Cmu02g0723 Cre02g1035 Cone12ag1045 Cone8ag1078 . . Lsi03g00576 Csa07g00683 . Cme01g00121 . . . . . . . . . . . . Cma19g00551 . Car19g00409 . . . . . . . . . . . . . . . . . . Chy01g00131 .
Vvi3g705 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00981 Cam10g1002 Cec10g1032 Cco10g0995 Clacu10g1023 Cmu10g1806 Cre10g1180 Cone12ag1044 Cone8ag1077 . . . . . . . . . . . . . . Sed13g0434 Cmo04g00481 Cmo16g00335 . . . . . Cpe01g00402 Bhi11g01133 Tan01g0628 Cmetu07g0733 . Hepe07g0411 Mch10g0425 . . . . . . . . Lsi03g01018 . . Cme07g02191
   
Previous Page 308 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
6 41832002 41836212 + Bda023021.1 Bda06g01202 1202
8 7216612 7219338 - Bda029135.1 Bda08g00679 679
8 7225733 7226453 + Bda029136.1 Bda08g00680 680
5 37019456 37025884 + XM_039031077.1 Bhi05g01042 1042
11 33026590 33033825 + XM_039047891.1 Bhi11g01133 1133
11 33679445 33689675 + XM_039047905.1 Bhi11g01137 1137
11 33718223 33719828 - XM_039047078.1 Bhi11g01138 1138
11 33798790 33802531 + XM_039047623.1 Bhi11g01139 1139
2 36112390 36115184 + BLOR10661 Blo02g00931 931
3 2591239 2595587 + BLOR11254 Blo03g00073 73
5 38183512 38184687 - Bma021692.1 Bma05g00650 650
5 38190544 38193336 + Bma031196 Bma05g00651 651
12 3796380 3800317 - Bma007180.1 Bma12g00282 282
5 19025974 19027125 - Bpe017892.1 Bpe05g00472 472
5 19032683 19035427 + Bpe017893.1 Bpe05g00473 473
7 1977469 1981707 - Bpe021086.2 Bpe07g00275 275
2 8424661 8439642 + CaPI482276_02g007110.1 Cam02g0711 711
2 8469170 8471374 + CaPI482276_02g007120.1 Cam02g0712 712
2 8479366 8492192 - CaPI482276_02g007130.1 Cam02g0713 713
2 8518469 8527616 + CaPI482276_02g007160.1 Cam02g0716 716
10 22308270 22316285 + CaPI482276_10g010020.1 Cam10g1002 1002
11 9149062 9158087 + Carg23035-RA Car11g01141 1141
11 9163980 9165703 + Carg23036-RA Car11g01142 1142
11 9173021 9179778 - Carg23037-RA Car11g01143 1143
19 5965588 5969996 - Carg16331-RA Car19g00409 409
19 5979649 5988211 + Carg16334-RA Car19g00412 412
19 5990413 5993471 - Carg16335-RA Car19g00413 413
19 6005021 6015415 - Carg16336-RA Car19g00414 414
2 7739761 7745435 + CcPI632755_02g007460.1 Cco02g0746 746
2 7773699 7775913 + CcPI632755_02g007470.1 Cco02g0747 747
2 7784152 7797004 - CcPI632755_02g007480.1 Cco02g0748 748
2 7831236 7835097 + CcPI632755_02g007510.1 Cco02g0751 751
10 21527129 21535151 + CcPI632755_10g009950.1 Cco10g0995 995
10 21855030 21860038 + CcPI632755_10g010170.1 Cco10g1017 1017
2 7637320 7649666 + CePI673135_02g007240.1 Cec02g0724 724
2 7688845 7691055 + CePI673135_02g007250.1 Cec02g0725 725
2 7699547 7711460 - CePI673135_02g007260.1 Cec02g0726 726
2 7746245 7750026 + CePI673135_02g007290.1 Cec02g0729 729
10 23206500 23214542 + CePI673135_10g010320.1 Cec10g1032 1032
1 822147 834265 + Chy1G001270.1 Chy01g00127 127
1 848554 850650 + Chy1G001280.1 Chy01g00128 128
1 855791 862652 - Chy1G001290.1 Chy01g00129 129
1 870319 874550 + Chy1G001310.1 Chy01g00131 131
2 7444933 7450613 + ClG42_02g0072000.10 Clacu02g0720 720
2 7480653 7482832 + ClG42_02g0072100.10 Clacu02g0721 721
2 7491074 7503877 - ClG42_02g0072200.10 Clacu02g0722 722
2 7539649 7543217 + ClG42_02g0072500.10 Clacu02g0725 725
10 21972656 21980654 + ClG42_10g0102300.10 Clacu10g1023 1023
2 7793543 7806232 + ClCG02G006760.2 Cla02g00678 678
2 7836120 7838293 + ClCG02G006780.1 Cla02g00679 679
2 7846474 7865731 - ClCG02G006790.2 Cla02g00680 680
2 7901070 7905759 + ClCG02G006820.1 Cla02g00682 682
10 22989090 22992817 + ClCG10G010285.1 Cla10g00981 981
10 23321388 23327923 + ClCG10G010490.2 Cla10g00999 999
11 11226267 11233777 + CmaCh11G017000.1 Cma11g01700 1700
11 11238101 11240026 - CmaCh11G017010.1 Cma11g01701 1701
19 6296797 6301870 - CmaCh19G005510.1 Cma19g00551 551
19 6310020 6318315 + CmaCh19G005530.1 Cma19g00553 553
19 6318015 6323838 - CmaCh19G005540.1 Cma19g00554 554
19 6335453 6346194 - CmaCh19G005560.1 Cma19g00556 556
1 808739 815496 + MELO3C018515.2.1 Cme01g00117 117
1 844087 846594 + MELO3C018516.2.1 Cme01g00118 118
1 850501 859661 - MELO3C018517.2.1 Cme01g00119 119
1 868215 873363 + MELO3C018520.2.1 Cme01g00121 121
7 26136501 26140085 - MELO3C017995.2.1 Cme07g02177 2177
7 26146937 26148604 + MELO3C017996.2.1 Cme07g02178 2178
7 26152963 26159751 - MELO3C017997.2.1 Cme07g02179 2179
7 26208539 26213292 - MELO3C018010.2.1 Cme07g02191 2191
7 404860 411888 + PI0018162.1 Cmetu07g0733 733
7 462829 467657 + PI0026717.1 Cmetu07g1041 1041
7 476491 478015 - PI0007370.1 Cmetu07g1092 1092
9 15839758 15841936 - PI0028656.1 Cmetu09g1555 1555
4 2393791 2398210 + CmoCh04G004810.1 Cmo04g00481 481
4 2401654 2408434 + CmoCh04G004820.1 Cmo04g00482 482
4 2416430 2420602 + CmoCh04G004840.1 Cmo04g00484 484
11 9961919 9974251 + CmoCh11G014180.1 Cmo11g01418 1418
11 9982115 9983817 + CmoCh11G014190.1 Cmo11g01419 1419
11 9990060 9997337 - CmoCh11G014200.1 Cmo11g01420 1420
16 1551786 1556776 + CmoCh16G003350.1 Cmo16g00335 335
16 1580268 1581725 - CmoCh16G003420.1 Cmo16g00342 342
16 1585931 1591137 + CmoCh16G003430.1 Cmo16g00343 343
19 6469929 6475043 - CmoCh19G005650.1 Cmo19g00565 565
19 6486418 6494737 + CmoCh19G005680.1 Cmo19g00568 568
19 6512806 6522967 - CmoCh19G005690.1 Cmo19g00569 569
2 7350754 7355896 + CmPI595203_02g007170.1 Cmu02g0717 717
2 7388562 7390731 + CmPI595203_02g007190.1 Cmu02g0719 719
2 7398920 7411724 - CmPI595203_02g007200.1 Cmu02g0720 720
2 7447648 7451919 + CmPI595203_02g007230.1 Cmu02g0723 723
10 22582788 22590786 + CmPI595203_10g018060.1 Cmu10g1806 1806
3 29058335 29063486 - Conep03aG0152500.1 Cone3ag1026 1026
8 9742132 9743757 + Conep08aG0110800.1 Cone8ag1077 1077
8 9743970 9746337 - Conep08aG0110900.1 Cone8ag1078 1078
8 9746620 9748684 + Conep08aG0111000.1 Cone8ag1079 1079
8 9750376 9755581 + Conep08aG0111100.1 Cone8ag1080 1080
8 9763392 9766835 - Conep08aG0111200.1 Cone8ag1081 1081
8 9769553 9772276 + Conep08aG0111300.1 Cone8ag1082 1082
10 7267596 7269035 + Conep10aG0106800.1 Cone10ag1041 1041
10 7270672 7276026 - Conep10aG0106900.1 Cone10ag1042 1042
12 8714108 8715875 + Conep12aG0107800.1 Cone12ag1044 1044
12 8715994 8718229 - Conep12aG0107900.1 Cone12ag1045 1045
12 8718377 8721165 + Conep12aG0108000.1 Cone12ag1046 1046
12 8722392 8727763 + Conep12aG0108100.1 Cone12ag1047 1047
12 8728788 8730270 - Conep12aG0108200.1 Cone12ag1048 1048
12 8733591 8736981 - Conep12aG0108300.1 Cone12ag1049 1049
12 8737251 8740316 + Conep12aG0108400.1 Cone12ag1050 1050
1 2326863 2332476 + Cp4.1LG01g02630.1 Cpe01g00402 402
1 2333576 2340382 + Cp4.1LG01g02670.1 Cpe01g00403 403
1 2341237 2342373 - Cp4.1LG01g02530.1 Cpe01g00404 404
1 2346667 2351937 + Cp4.1LG01g02640.1 Cpe01g00405 405
4 3984292 3995682 + Cp4.1LG04g07590.1 Cpe04g00325 325
4 4005182 4008111 + Cp4.1LG04g07620.1 Cpe04g00326 326
4 4014431 4022570 - Cp4.1LG04g07550.1 Cpe04g00327 327
14 1556221 1557626 - Cp4.1LG14g04550.1 Cpe14g00269 269
14 1561980 1568094 + Cp4.1LG14g04470.1 Cpe14g00270 270
15 5514145 5519392 - Cp4.1LG15g04380.1 Cpe15g00438 438
15 5530142 5542293 + Cp4.1LG15g04360.1 Cpe15g00440 440
15 5543153 5546067 - Cp4.1LG15g04420.1 Cpe15g00442 442
15 5557181 5567494 - Cp4.1LG15g04400.1 Cpe15g00443 443
2 7978033 7983642 + CrPI670011_02g010300.1 Cre02g1030 1030
2 8027448 8029619 + CrPI670011_02g010310.1 Cre02g1031 1031
2 8038237 8050961 - CrPI670011_02g010320.1 Cre02g1032 1032
2 8077613 8081426 + CrPI670011_02g010350.1 Cre02g1035 1035
10 24244822 24252887 + CrPI670011_10g011800.1 Cre10g1180 1180
7 4889584 4895540 - CsaV3_7G007820.1 Csa07g00683 683
7 4901681 4909372 + CsaV3_7G007850.1 Csa07g00686 686
7 4913547 4914938 - CsaV3_7G007860.1 Csa07g00687 687
7 4928707 4935457 - CsaV3_7G007870.1 Csa07g00688 688
7 4192107 4202950 + Hsped.07g04110.1 Hepe07g0411 411
7 4351725 4353171 - Hsped.07g04180.1 Hepe07g0418 418
7 4372803 4376943 + Hsped.07g04190.1 Hepe07g0419 419
3 6911665 6925566 + Lsi03G005720.1 Lsi03g00572 572
3 7014859 7016907 + Lsi03G005730.1 Lsi03g00573 573
3 7026404 7044094 - Lsi03G005740.1 Lsi03g00574 574
3 7081369 7086079 + Lsi03G005760.1 Lsi03g00576 576
3 19577915 19588246 + Lsi03G010180.1 Lsi03g01018 1018
3 19794922 19802188 + Lsi03G010250.1 Lsi03g01025 1025
3 19818463 19820417 - Lsi03G010260.1 Lsi03g01026 1026
3 19851329 19855375 + Lsi03G010270.1 Lsi03g01027 1027
10 2820178 2824489 + MC10g0350 Mch10g0425 425
10 2928212 2934468 + MC10g0363 Mch10g0447 447
10 2938142 2939627 - MC10g0364 Mch10g0448 448
10 2945459 2949608 + MC10g0365 Mch10g0449 449
7 9507937 9509336 - Sed0008565.1 Sed07g1264 1264
11 17715268 17741206 - Sed0005166.3 Sed11g0819 819
13 2872501 2877623 + Sed0011178.1 Sed13g0434 434
14 24811440 24815912 + Sed0003525.1 Sed14g1676 1676
1 5853505 5863469 + Tan0003997.1 Tan01g0628 628
1 6130118 6138964 + Tan0000152.1 Tan01g0639 639
1 6143738 6145240 - Tan0019658.1 Tan01g0640 640
1 6163792 6168605 + Tan0010108.1 Tan01g0641 641
3 7149869 7160655 - Vvi3g696 Vvi3g696 696
3 7168720 7177148 + Vvi3g697 Vvi3g697 697
3 7192503 7193911 + Vvi3g698 Vvi3g698 698
3 7195862 7206255 - Vvi3g699 Vvi3g699 699
3 7219507 7223633 + Vvi3g700 Vvi3g700 700
3 7223774 7230300 - Vvi3g701 Vvi3g701 701
3 7244887 7245118 - Vvi3g702 Vvi3g702 702
3 7287264 7291791 + Vvi3g703 Vvi3g703 703
3 7291826 7302798 + Vvi3g704 Vvi3g704 704
3 7303287 7311164 - Vvi3g705 Vvi3g705 705
       

DecoBrowse