Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g711 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g712 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g713 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g714 . . . Bda11g01264 . Bpe10g00838 Bma14g01791 Bma15g00186 . . . . . . . . . . . . . . . . . . . . . . . Cone13ag1037 Cone19ag1028 . Cone12ag0641 . . . . Blo06g00876 Blo11g00914 Bda07g01600 Bda11g01264 . . Bma01g00050 . . . . . Cma05g00010 . Car05g00008 . . . . . . . . . . . . . . . . . . . .
Vvi1g715 . Blo16g01158 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0640 . . . . . . . . . . . Bma06g00623 . . . . Cma05g00009 . Car05g00007 . Cpe07g00689 . . . . . . . . . . . . . . . . . .
Vvi1g716 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g717 . Blo16g01157 . Bda11g01263 Bpe13g01460 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01263 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g718 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g719 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g720 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 72 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
7 29680754 29681497 - Bda028469.1 Bda07g01600 1600
11 13234817 13236655 - Bda007778.1 Bda11g01263 1263
11 13275521 13276755 - Bda007781.1 Bda11g01264 1264
6 32050483 32053042 - BLOR17459 Blo06g00876 876
11 18868270 18870338 - BLOR03790 Blo11g00914 914
16 40094567 40103673 - BLOR21944 Blo16g01157 1157
16 40104742 40118764 - BLOR21945 Blo16g01158 1158
1 547629 548720 + Bma000218.1 Bma01g00050 50
6 33014053 33015906 + Bma023565.1 Bma06g00623 623
14 38500926 38501662 - Bma012562.1 Bma14g01791 1791
15 1932753 1933264 + Bma013168.1 Bma15g00186 186
10 14351472 14351962 - Bpe003142.2 Bpe10g00838 838
13 19877726 19879480 - Bpe011125.1 Bpe13g01460 1460
5 34210 36604 - Carg21807-RA Car05g00007 7
5 40976 42881 - Carg21808-RA Car05g00008 8
5 33748 36119 - CmaCh05G000090.1 Cma05g00009 9
5 40078 42919 - CmaCh05G000100.1 Cma05g00010 10
12 5838910 5841244 - Conep12aG0066300.1 Cone12ag0640 640
12 5862591 5865681 - Conep12aG0066400.1 Cone12ag0641 641
13 8607822 8608724 - Conep13aG0106800.1 Cone13ag1037 1037
19 7659869 7660436 - Conep19aG0106000.1 Cone19ag1028 1028
7 5767205 5772056 - Cp4.1LG07g06870.1 Cpe07g00689 689
1 8121187 8123949 + Vvi1g711 Vvi1g711 711
1 8170603 8175052 + Vvi1g712 Vvi1g712 712
1 8176318 8182598 - Vvi1g713 Vvi1g713 713
1 8196426 8202028 + Vvi1g714 Vvi1g714 714
1 8209577 8210725 + Vvi1g715 Vvi1g715 715
1 8215665 8218166 - Vvi1g716 Vvi1g716 716
1 8251528 8252874 + Vvi1g717 Vvi1g717 717
1 8275279 8276291 - Vvi1g718 Vvi1g718 718
1 8296331 8298549 + Vvi1g719 Vvi1g719 719
1 8304089 8304305 - Vvi1g720 Vvi1g720 720
       

DecoBrowse