Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1081 . . Bda01g01780 . . . . . . . . . . . . . Cpe01g01879 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe02g01958 . . . Cmo04g02266 . Cma04g02167 . Car04g02098 . . . Bhi12g01010 . . . . . . Cla01g00686 Cam01g0717 Cec01g0710 Cco01g0740 Clacu01g0704 Cmu01g0676 Cre09g1828 Lsi09g00745 Csa05g01320 Chy09g00449 Cme09g01254
Vvi1g1082 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1083 . . . . . . . . . . . . . . . . . Bhi07g00157 . . Lac13g1696 . . . . . . . . . . Cone13ag0671 Cone19ag0665 . . . . Chy10g00088 Cme10g01138 . . Bda07g01445 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00953 . .
Vvi1g1084 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1085 . . . . . . Bma14g01590 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy10g00057 . . . Bda07g01444 . Bpe11g01611 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00950 . .
Vvi1g1086 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1087 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1088 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1089 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0676 . . . . . . . . . . . . . . . . . Cmo15g00902 . Cma15g00867 . Car15g00816 . . Bhi12g01005 . . . . . Lcy10g1566 Cla01g00682 Cam01g0715 Cec01g0706 Cco01g0736 Clacu01g0701 Cmu01g0673 Cre09g1832 Lsi09g00740 Csa05g01316 . Cme09g01257
Vvi1g1090 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 109 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
1 54020726 54025042 - Bda004070.1 Bda01g01780 1780
7 26807246 26808772 - Bda028271.1 Bda07g01444 1444
7 26853915 26862117 - Bda028272.1 Bda07g01445 1445
7 8534536 8544312 - XM_039035866.1 Bhi07g00157 157
12 30679984 30683247 - XM_039018386.1 Bhi12g01005 1005
12 30784125 30788445 - XM_039051058.1 Bhi12g01010 1010
14 32777572 32787030 + Bma012282.1 Bma14g01590 1590
2 21473322 21478812 - Bpe009782.1 Bpe02g01958 1958
11 12234297 12243167 - Bpe004928.1 Bpe11g01611 1611
1 8018250 8020085 - CaPI482276_01g007150.1 Cam01g0715 715
1 8029576 8042310 - CaPI482276_01g007170.1 Cam01g0717 717
4 17126320 17134700 + Carg17705-RA Car04g02098 2098
15 4606138 4607967 + Carg01339-RA Car15g00816 816
1 7812748 7814571 - CcPI632755_01g007360.1 Cco01g0736 736
1 7825455 7839625 - CcPI632755_01g007400.1 Cco01g0740 740
1 7881678 7883513 - CePI673135_01g007060.1 Cec01g0706 706
1 7894573 7909723 - CePI673135_01g007100.1 Cec01g0710 710
9 3991162 3994270 + Chy9G161650.1 Chy09g00449 449
10 1456279 1479254 - Chy10G172510.1 Chy10g00057 57
10 2289100 2297207 + Chy10G172820.1 Chy10g00088 88
1 7685852 7687687 - ClG42_01g0070100.10 Clacu01g0701 701
1 7697069 7711118 - ClG42_01g0070400.10 Clacu01g0704 704
1 8094315 8096150 - ClCG01G006970.1 Cla01g00682 682
1 8105532 8117299 - ClCG01G007010.2 Cla01g00686 686
4 15179283 15185614 + CmaCh04G021670.1 Cma04g02167 2167
15 4364340 4366169 + CmaCh15G008670.1 Cma15g00867 867
9 17401850 17406331 + MELO3C005211.2.1 Cme09g01254 1254
9 17430708 17432822 + MELO3C027064.2.1 Cme09g01257 1257
10 10727227 10734538 - MELO3C020052.2.1 Cme10g01138 1138
4 16921662 16929806 + CmoCh04G022660.1 Cmo04g02266 2266
15 4545653 4547482 + CmoCh15G009020.1 Cmo15g00902 902
1 7659218 7661053 - CmPI595203_01g006730.1 Cmu01g0673 673
1 7670404 7684444 - CmPI595203_01g006760.1 Cmu01g0676 676
13 6673418 6683538 - Conep13aG0069500.1 Cone13ag0671 671
13 6739139 6741318 + Conep13aG0070000.1 Cone13ag0676 676
19 5674795 5682038 + Conep19aG0068600.1 Cone19ag0665 665
1 16107474 16111718 + Cp4.1LG01g18820.1 Cpe01g01879 1879
9 36653452 36668500 + CrPI670011_09g018280.1 Cre09g1828 1828
9 36678129 36679964 + CrPI670011_09g018320.1 Cre09g1832 1832
5 7971214 7992684 + CsaV3_5G012470.1 Csa05g00950 950
5 8015214 8021268 + CsaV3_5G012500.1 Csa05g00953 953
5 13971662 13974023 - CsaV3_5G017390.1 Csa05g01316 1316
5 13988540 13994592 - CsaV3_5G017430.1 Csa05g01320 1320
13 18900194 18908696 + Lag0041492.1 Lac13g1696 1696
10 39999325 40001160 + Maker00006907 Lcy10g1566 1566
9 8530422 8532251 - Lsi09G007400.1 Lsi09g00740 740
9 8559844 8570845 - Lsi09G007460.1 Lsi09g00745 745
1 18308818 18320345 + Vvi1g1081 Vvi1g1081 1081
1 18321179 18322563 - Vvi1g1082 Vvi1g1082 1082
1 18351867 18371377 - Vvi1g1083 Vvi1g1083 1083
1 18388462 18389993 + Vvi1g1084 Vvi1g1084 1084
1 18394883 18440368 - Vvi1g1085 Vvi1g1085 1085
1 18461883 18463681 - Vvi1g1086 Vvi1g1086 1086
1 18487514 18500361 + Vvi1g1087 Vvi1g1087 1087
1 18500364 18519866 + Vvi1g1088 Vvi1g1088 1088
1 18520400 18526595 + Vvi1g1089 Vvi1g1089 1089
1 18533068 18533527 + Vvi1g1090 Vvi1g1090 1090
       

DecoBrowse