Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g546 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g547 . . . . . . . . Cmo19g00657 . . . . . . . Cpe15g00520 . . . . . . . . . . . . . . . Cone8ag1176 . . . Csa07g00822 . . . . . Bda14g00535 . . Bma03g00535 . . . . . . . Car19g00490 . . . . . . . . . . . . . . . . . . . .
Vvi3g548 . . . . . . . . Cmo19g00658 Cmo11g01326 . . . . Sed10g2080 Cpe04g00253 Cpe15g00521 Bhi05g01181 Tan02g0845 Cmetu01g1846 . Hepe02g0543 . . Cla02g00553 Cam02g0577 Cec02g0579 Cco02g0590 Clacu02g0577 Cmu02g0573 Cre02g0904 Cone12ag1130 Cone8ag1177 . . . Csa07g00826 . Cme01g00004 Blo04g00501 . . Bda14g00536 Bpe15g00880 . Bma03g00536 . . . . . Cma19g00646 . Car19g00491 . . . . . . . . . . . . . . . . Lsi11g01060 . Chy01g00004 .
Vvi3g549 . . . . . . . . . Cmo11g01323 . . . . Sed10g2082 Cpe04g00252 . Bhi05g01183 Tan02g0843 Cmetu01g1751 . . . . Cla02g00552 Cam02g0576 Cec02g0578 Cco02g0589 Clacu02g0576 Cmu02g0572 Cre02g0903 . . Cone3ag1138 Cone10ag1149 . Csa07g00825 . Cme01g00003 Blo04g00502 . . Bda14g00537 Bpe15g00879 . Bma03g00537 . . . . Cma11g01783 . Car11g01068 . . . . . . . . . . . . . . . . . Lsi11g01061 . Chy01g00003 .
Vvi3g550 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g551 . . . . . . . . . Cmo11g01321 . . . . . Cpe04g00250 . Bhi05g01185 . . . Hepe02g0539 . . Cla02g00551 Cam02g0575 Cec02g0577 Cco02g0588 Clacu02g0575 Cmu02g0571 Cre02g0902 Cone12ag1132 Cone8ag1178 . . . Csa07g00823 . Cme01g00001 Blo04g00503 . . Bda14g00539 Bpe15g00877 . Bma03g00538 . . . . Cma11g01785 . Car11g01066 . . . . . . . . . . . . . . . . . Lsi11g01064 . Chy01g00001 .
Vvi3g552 . . . . . . . . . Cmo11g01320 . . . . . Cpe04g00249 . Bhi05g01187 . . . . . . Cla02g00549 Cam02g0573 Cec02g0575 Cco02g0586 Clacu02g0573 Cmu02g0569 Cre02g0900 Cone12ag1133 Cone8ag1180 . . . . . Cme01g01477 . . . . . . . . . . . Cma11g01786 . Car11g01065 . . . . . . . . . . . . . . . . . Lsi11g01066 . Chy01g00826 .
Vvi3g553 . . . . . Bpe12g00073 . . . Cmo11g01319 . . . . Sed05g3639 Cpe04g00248 . Bhi05g01192 Tan02g0838 Cmetu11g2382 . Hepe02g0535 . . Cla02g00548 Cam02g0572 Cec02g0574 Cco02g0585 Clacu02g0572 Cmu02g0568 Cre02g0899 Cone12ag1134 Cone8ag1181 Cone3ag1139 Cone10ag1150 Lsi10g00657 . . Cme01g01476 . . Bda15g00019 . . . . . . . . . . Car11g01063 . . . . . . . . . . . . . . . . . Lsi11g01067 . Chy01g00825 Cme11g00217
Vvi3g554 Blo02g00794 . . Bda08g00902 Bpe07g00458 . . Bma12g00547 . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1140 Cone10ag1151 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g555 . . . . . . . . Cmo19g00660 Cmo11g01317 . . . . . Cpe04g00246 Cpe15g00523 Bhi05g01195 . . . . . . Cla02g00546 Cam02g0569 Cec02g0572 Cco02g0583 Clacu02g0570 Cmu02g0566 Cre02g0897 Cone12ag1136 Cone8ag1183 Cone3ag1141 Cone10ag1152 . . . Cme01g01472 . . . . . . . . . . . Cma11g01736 Cma19g00649 Car11g01061 Car19g00493 . . . . . . . . . . . . . . . . Lsi11g01069 . Chy01g00823 .
   
Previous Page 293 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
8 16435600 16440588 + Bda029521.1 Bda08g00902 902
14 3866258 3869110 - Bda027281.1 Bda14g00535 535
14 3870121 3873270 + Bda027282.1 Bda14g00536 536
14 3875923 3878282 - Bda027283.1 Bda14g00537 537
14 3880472 3906815 + Bda027285.1 Bda14g00539 539
15 1416425 1417576 + Bda011770.1 Bda15g00019 19
5 42172995 42176979 + XM_039032954.1 Bhi05g01181 1181
5 42178941 42182266 - XM_039033122.1 Bhi05g01183 1183
5 42204761 42221291 + XM_039031880.1 Bhi05g01185 1185
5 42273942 42277702 + XM_039031387.1 Bhi05g01187 1187
5 42282780 42284636 - XM_039031029.1 Bhi05g01192 1192
5 42385560 42388925 + XM_039033014.1 Bhi05g01195 1195
2 26927629 26931810 - BLOR10524 Blo02g00794 794
4 4163235 4166033 + BLOR13413 Blo04g00501 501
4 4166742 4170083 - BLOR13414 Blo04g00502 502
4 4170457 4187159 + BLOR13415 Blo04g00503 503
3 4156325 4162441 - Bma016818.1 Bma03g00535 535
3 4165547 4168664 + Bma016819.1 Bma03g00536 536
3 4169931 4173705 - Bma016820.1 Bma03g00537 537
3 4175896 4200004 + Bma016821.1 Bma03g00538 538
12 22499412 22504440 + Bma007681.1 Bma12g00547 547
7 6685406 6693564 - Bpe021291.1 Bpe07g00458 458
12 514937 516058 - Bpe005312.1 Bpe12g00073 73
15 18732582 18749381 - Bpe001799.2 Bpe15g00877 877
15 18751464 18755652 + Bpe001801.1 Bpe15g00879 879
15 18756930 18760030 - Bpe024586 Bpe15g00880 880
2 6487070 6490522 - CaPI482276_02g005690.1 Cam02g0569 569
2 6523411 6524529 + CaPI482276_02g005720.1 Cam02g0572 572
2 6528989 6530805 - CaPI482276_02g005730.1 Cam02g0573 573
2 6544188 6559111 - CaPI482276_02g005750.1 Cam02g0575 575
2 6568233 6571806 + CaPI482276_02g005760.1 Cam02g0576 576
2 6573756 6577330 - CaPI482276_02g005770.1 Cam02g0577 577
11 8189990 8192885 - Carg26491-RA Car11g01061 1061
11 8212655 8213707 + Carg26489-RA Car11g01063 1063
11 8216766 8219518 - Carg26487-RA Car11g01065 1065
11 8231521 8243974 + Carg26486-RA Car11g01066 1066
11 8247335 8251884 + Carg26484-RA Car11g01068 1068
19 6507251 6519512 - Carg22033-RA Car19g00490 490
19 6523008 6527163 + Carg22032-RA Car19g00491 491
19 6535628 6537842 + Carg22030-RA Car19g00493 493
2 5643071 5645955 - CcPI632755_02g005830.1 Cco02g0583 583
2 5679065 5680183 + CcPI632755_02g005850.1 Cco02g0585 585
2 5684540 5686347 - CcPI632755_02g005860.1 Cco02g0586 586
2 5705038 5720162 - CcPI632755_02g005880.1 Cco02g0588 588
2 5726154 5729810 + CcPI632755_02g005890.1 Cco02g0589 589
2 5731668 5735229 - CcPI632755_02g005900.1 Cco02g0590 590
2 5529721 5532433 - CePI673135_02g005720.1 Cec02g0572 572
2 5552261 5553379 + CePI673135_02g005740.1 Cec02g0574 574
2 5557774 5559578 - CePI673135_02g005750.1 Cec02g0575 575
2 5580809 5594166 - CePI673135_02g005770.1 Cec02g0577 577
2 5600020 5603586 + CePI673135_02g005780.1 Cec02g0578 578
2 5605499 5609058 - CePI673135_02g005790.1 Cec02g0579 579
1 2216 23358 + Chy1G000010.1 Chy01g00001 1
1 27554 31341 + Chy1G000030.1 Chy01g00003 3
1 32580 36497 - Chy1G000040.1 Chy01g00004 4
1 6851113 6853545 - Chy1G008230.1 Chy01g00823 823
1 6934583 6935698 + Chy1G008250.1 Chy01g00825 825
1 6951848 6954209 - Chy1G008260.1 Chy01g00826 826
2 5461626 5464321 - ClG42_02g0057000.10 Clacu02g0570 570
2 5497455 5498573 + ClG42_02g0057200.10 Clacu02g0572 572
2 5502984 5504774 - ClG42_02g0057300.10 Clacu02g0573 573
2 5518591 5533481 - ClG42_02g0057500.10 Clacu02g0575 575
2 5539514 5543090 + ClG42_02g0057600.10 Clacu02g0576 576
2 5545008 5548556 - ClG42_02g0057700.10 Clacu02g0577 577
2 5724842 5729102 - ClCG02G005260.2 Cla02g00546 546
2 5762375 5764115 + ClCG02G005280.1 Cla02g00548 548
2 5770150 5772558 - ClCG02G005290.1 Cla02g00549 549
2 5785953 5801765 - ClCG02G005310.1 Cla02g00551 551
2 5806128 5811537 + ClCG02G005320.1 Cla02g00552 552
2 5812762 5816895 - ClCG02G005330.1 Cla02g00553 553
11 11524791 11526649 - CmaCh11G017360.1 Cma11g01736 1736
11 11927921 11933131 - CmaCh11G017830.1 Cma11g01783 1783
11 11934357 11954323 - CmaCh11G017850.1 Cma11g01785 1785
11 11953044 11956633 + CmaCh11G017860.1 Cma11g01786 1786
19 6854502 6858063 + CmaCh19G006460.1 Cma19g00646 646
19 6865465 6868673 + CmaCh19G006490.1 Cma19g00649 649
1 1969 25873 + MELO3C018404.2.1 Cme01g00001 1
1 26734 31054 + MELO3C018406.2.1 Cme01g00003 3
1 31512 35843 - MELO3C018407.2.1 Cme01g00004 4
1 19091932 19095255 - MELO3C012564.2.1 Cme01g01472 1472
1 19201667 19203225 + MELO3C012570.2.1 Cme01g01476 1476
1 19220791 19224759 - MELO3C012571.2.1 Cme01g01477 1477
11 2569630 2572061 + MELO3C020955.2.1 Cme11g00217 217
1 34699 38675 + PI0017971.1 Cmetu01g1751 1751
1 40017 44210 - PI0001348.1 Cmetu01g1846 1846
11 27061657 27063760 + PI0023107.1 Cmetu11g2382 2382
11 9107359 9111195 - CmoCh11G013170.1 Cmo11g01317 1317
11 9117834 9118901 + CmoCh11G013190.1 Cmo11g01319 1319
11 9122655 9126097 - CmoCh11G013200.1 Cmo11g01320 1320
11 9133583 9147907 + CmoCh11G013210.1 Cmo11g01321 1321
11 9150689 9155506 + CmoCh11G013230.1 Cmo11g01323 1323
11 9157527 9161769 - CmoCh11G013260.1 Cmo11g01326 1326
19 7073158 7081270 - CmoCh19G006570.1 Cmo19g00657 657
19 7085358 7089340 + CmoCh19G006580.1 Cmo19g00658 658
19 7096803 7100615 + CmoCh19G006600.1 Cmo19g00660 660
2 5379860 5382556 - CmPI595203_02g005660.1 Cmu02g0566 566
2 5415694 5416812 + CmPI595203_02g005680.1 Cmu02g0568 568
2 5421110 5422896 - CmPI595203_02g005690.1 Cmu02g0569 569
2 5436730 5451652 - CmPI595203_02g005710.1 Cmu02g0571 571
2 5457685 5461261 + CmPI595203_02g005720.1 Cmu02g0572 572
2 5463179 5466727 - CmPI595203_02g005730.1 Cmu02g0573 573
3 29964129 29966076 - Conep03aG0164300.1 Cone3ag1138 1138
3 29968807 29969928 - Conep03aG0164400.1 Cone3ag1139 1139
3 29973530 29978540 - Conep03aG0164500.1 Cone3ag1140 1140
3 29987496 29991799 + Conep03aG0164600.1 Cone3ag1141 1141
8 10129681 10132935 - Conep08aG0120900.1 Cone8ag1176 1176
8 10133260 10136076 + Conep08aG0121000.1 Cone8ag1177 1177
8 10136980 10144929 - Conep08aG0121100.1 Cone8ag1178 1178
8 10146281 10147936 + Conep08aG0121300.1 Cone8ag1180 1180
8 10148387 10148936 - Conep08aG0121400.1 Cone8ag1181 1181
8 10154013 10156212 + Conep08aG0121700.1 Cone8ag1183 1183
10 8313653 8316847 - Conep10aG0118200.1 Cone10ag1149 1149
10 8329345 8330466 - Conep10aG0118300.1 Cone10ag1150 1150
10 8332507 8337835 - Conep10aG0118400.1 Cone10ag1151 1151
10 8345897 8350638 + Conep10aG0118500.1 Cone10ag1152 1152
12 9089833 9093485 + Conep12aG0116600.1 Cone12ag1130 1130
12 9095348 9106919 - Conep12aG0116800.1 Cone12ag1132 1132
12 9107434 9109929 + Conep12aG0116900.1 Cone12ag1133 1133
12 9110209 9111342 - Conep12aG0117000.1 Cone12ag1134 1134
12 9115460 9117723 + Conep12aG0117200.1 Cone12ag1136 1136
4 3070518 3073621 - Cp4.1LG04g08410.1 Cpe04g00246 246
4 3086597 3087649 + Cp4.1LG04g08350.1 Cpe04g00248 248
4 3090496 3094078 - Cp4.1LG04g08320.1 Cpe04g00249 249
4 3116422 3130347 + Cp4.1LG04g08370.1 Cpe04g00250 250
4 3131280 3136969 + Cp4.1LG04g08360.1 Cpe04g00252 252
4 3135670 3137897 - Cp4.1LG04g08300.1 Cpe04g00253 253
15 6117007 6130093 - Cp4.1LG15g05260.1 Cpe15g00520 520
15 6135362 6139418 + Cp4.1LG15g05170.1 Cpe15g00521 521
15 6146555 6150595 + Cp4.1LG15g05190.1 Cpe15g00523 523
2 5978037 5981986 - CrPI670011_02g008970.1 Cre02g0897 897
2 6021116 6022234 + CrPI670011_02g008990.1 Cre02g0899 899
2 6026583 6028389 - CrPI670011_02g009000.1 Cre02g0900 900
2 6042494 6057523 - CrPI670011_02g009020.1 Cre02g0902 902
2 6063505 6067060 + CrPI670011_02g009030.1 Cre02g0903 903
2 6069001 6072578 - CrPI670011_02g009040.1 Cre02g0904 904
7 5775991 5786973 + CsaV3_7G010200.1 Csa07g00822 822
7 5788078 5807246 + CsaV3_7G010210.1 Csa07g00823 823
7 5810824 5815616 + CsaV3_7G010230.1 Csa07g00825 825
7 5816050 5820837 - CsaV3_7G010240.1 Csa07g00826 826
2 5358537 5360643 + Hsped.02g05350.1 Hepe02g0535 535
2 5441870 5445772 + Hsped.02g05390.1 Hepe02g0539 539
2 5479102 5483231 - Hsped.02g05430.1 Hepe02g0543 543
10 9152328 9153461 - Lsi10G006570.1 Lsi10g00657 657
11 18396734 18400674 + Lsi11G010600.1 Lsi11g01060 1060
11 18401733 18405692 - Lsi11G010610.1 Lsi11g01061 1061
11 18563049 18579619 + Lsi11G010640.1 Lsi11g01064 1064
11 18611731 18616511 + Lsi11G010660.1 Lsi11g01066 1066
11 18620273 18621391 - Lsi11G010670.1 Lsi11g01067 1067
11 18680659 18684699 + Lsi11G010690.1 Lsi11g01069 1069
5 44638990 44641396 - Sed0014401.1 Sed05g3639 3639
10 37268888 37273100 + Sed0014801.1 Sed10g2080 2080
10 37274277 37279709 - Sed0025253.2 Sed10g2082 2082
2 8959319 8961146 + Tan0017176.1 Tan02g0838 838
2 9070761 9074689 + Tan0016950.1 Tan02g0843 843
2 9075080 9079188 - Tan0020621.1 Tan02g0845 845
3 5292038 5292426 - Vvi3g546 Vvi3g546 546
3 5292442 5302186 - Vvi3g547 Vvi3g547 547
3 5305833 5311431 + Vvi3g548 Vvi3g548 548
3 5312670 5316729 - Vvi3g549 Vvi3g549 549
3 5320558 5322555 - Vvi3g550 Vvi3g550 550
3 5324927 5346808 - Vvi3g551 Vvi3g551 551
3 5351363 5352546 + Vvi3g552 Vvi3g552 552
3 5353549 5355228 - Vvi3g553 Vvi3g553 553
3 5357816 5367252 - Vvi3g554 Vvi3g554 554
3 5404937 5409770 + Vvi3g555 Vvi3g555 555
       

DecoBrowse