Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g272 . Blo12g01121 . . . Bpe02g00633 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g273 . . . . Bpe02g01186 . . . Cmo05g00612 . . . . Car12g00228 Sed01g1257 Cpe07g00208 . Bhi04g00863 Tan02g2552 Cmetu03g1677 . Hepe10g0374 . Lcy13g1423 . . . . . . . . . . Cone20ag0326 . . . . Blo17g00064 Blo18g00076 . . Bpe14g00521 . . . . . . . Cma12g00245 . Car05g00531 Cpe11g00514 . . . . . . . . Cla08g01212 Cam08g1674 Cec08g1252 Cco08g1370 Clacu08g1372 . Cre08g1156 . Csa02g02260 . .
Vvi4g274 Blo01g01780 Blo12g00751 . Bda03g00435 . Bpe02g00164 Bma04g00412 Bma01g02560 Cmo05g00611 Cmo12g00199 . Cma05g00586 . Car12g00227 . Cpe07g00207 . . . . . . . . . . . . . . . . . Cone17ag1129 Cone20ag0591 . . . . . . . . . Bpe04g00401 . . . . . . Cma12g00244 . Car05g00530 Cpe11g00513 . . . . . . . . . . . . . . . . Csa02g02258 . .
Vvi4g275 . . . . Bpe02g01187 . . . Cmo05g00610 . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1131 . . . . . Blo17g00063 . . Bda13g01326 Bpe14g00522 . . . Sed05g1602 . . . . . . Cpe11g00512 . Bhi09g02432 Tan01g3787 Cmetu04g0081 . Hepe01g2126 Mch11g0664 . . . . . . . . . Csa02g02257 . .
Vvi4g276 . . . . . . . . . . Cma01g01604 . . . . . . . . . . . . . . . . . . . . . Cone7ag1439 . . . Csa03g04544 Chy04g00158 Cme03g01761 . . . . . . . . . Cmo01g01494 Cmo09g00612 . . Car01g01224 . . Cpe02g00508 . . . . . . . . . . . . . . Lsi08g01069 . . .
Vvi4g277 Blo01g01778 Blo12g00752 . Bda03g00434 . Bpe02g00166 Bma04g00411 Bma01g02558 . . Cma01g01439 . Car09g00558 . . . Cpe06g00492 . . . . . . . . . . . . . . . . Cone17ag1132 Cone20ag0590 Lsi04g02325 Csa03g04545 Chy04g00157 . . . . . . Bpe04g00073 . . Sed05g1507 Cmo01g01491 Cmo09g00613 Cma09g00556 . . . . Cpe02g00509 Bhi09g02572 Tan01g3928 Cmetu04g0690 . Hepe01g2216 Mch11g0764 . . . . . . . . . . . Cme04g00182
Vvi4g278 . . . . . Bpe02g00167 . Bma01g02557 . . . . Car09g00559 . . . . . . . . . . . . . . . . . . . . Cone17ag1133 . Lsi04g02327 Csa03g04546 Chy04g00156 . . . . . . . . . Sed12g1393 . Cmo09g00614 Cma09g00632 . . . . . Bhi09g02573 Tan01g3929 Cmetu04g1273 . Hepe01g2217 Mch11g0765 . . . . . . . . . . . Cme04g00181
Vvi4g279 Blo01g01777 . . Bda03g00433 . . Bma04g00410 . Cmo05g00609 Cmo12g00198 . . Car09g00560 Car12g00226 . Cpe07g00206 Cpe06g00489 . . . . . . . . . . . . . . . . . . Lsi04g02328 Csa03g04547 Chy04g00155 Cme03g01757 . . . . . . . . Sed02g0905 . Cmo09g00615 Cma09g00633 Cma12g00243 . . Cpe11g00511 . Bhi09g02574 Tan01g3930 Cmetu04g2325 . Hepe01g2218 Mch11g0766 . . . . . . . . Lsi08g01074 Csa02g02256 Chy03g01261 Cme04g00180
Vvi4g280 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1135 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g281 . Blo12g00753 . Bda03g00431 . . Bma04g00409 . . . Cma01g01438 . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g02330 Csa03g04549 Chy04g00153 . . . . . . Bpe04g00399 . . . Cmo01g01488 . . . . . . Cpe02g00510 Bhi09g02577 . . . . . . . . . . . . . . . . Cme04g00178
   
Previous Page 376 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
3 3730655 3731294 + Bda016398.1 Bda03g00431 431
3 3736013 3737084 - Bda016400.1 Bda03g00433 433
3 3749638 3754057 + Bda016402.1 Bda03g00434 434
3 3755533 3758252 + Bda016403.1 Bda03g00435 435
13 35543753 35544319 - Bda000137.1 Bda13g01326 1326
4 21684615 21685300 + XM_039030472.1 Bhi04g00863 863
9 66347130 66351151 + XM_039043813.1 Bhi09g02432 2432
9 69867104 69874969 - XM_039043445.1 Bhi09g02572 2572
9 69902422 69907408 - XM_039042062.1 Bhi09g02573 2573
9 69908601 69910823 + XM_039042061.1 Bhi09g02574 2574
9 69979993 69983872 - XM_039044307.1 Bhi09g02577 2577
1 57491106 57492256 - BLOR01777 Blo01g01777 1777
1 57493349 57503009 + BLOR01778 Blo01g01778 1778
1 57523121 57535701 + BLOR01780 Blo01g01780 1780
12 25860155 25862705 - BLOR04770 Blo12g00751 751
12 25868188 25875343 - BLOR04771 Blo12g00752 752
12 25880313 25886721 - BLOR04772 Blo12g00753 753
12 28853618 28855528 - BLOR05140 Blo12g01121 1121
17 480684 481250 - BLOR15884 Blo17g00063 63
17 481687 483809 - BLOR15885 Blo17g00064 64
18 641057 641560 - BLOR08564 Blo18g00076 76
1 83235334 83238414 + Bma003439.1 Bma01g02557 2557
1 83240242 83245039 + Bma003440.1 Bma01g02558 2558
1 83259060 83260606 + Bma003442.1 Bma01g02560 2560
4 3323448 3325377 + Bma018872.1 Bma04g00409 409
4 3326548 3327674 - Bma018873.1 Bma04g00410 410
4 3332220 3336684 + Bma018874.1 Bma04g00411 411
4 3337880 3340638 + Bma018875.1 Bma04g00412 412
2 1132129 1134765 - Bpe008015.1 Bpe02g00164 164
2 1147422 1152246 - Bpe008017.1 Bpe02g00166 166
2 1154042 1157147 - Bpe008018.1 Bpe02g00167 167
2 4133603 4135510 - Bpe025090 Bpe02g00633 633
2 15539710 15540195 + Bpe009047.1 Bpe02g01186 1186
2 15542245 15542811 + Bpe009048.2 Bpe02g01187 1187
4 570783 572266 - Bpe014796.2 Bpe04g00073 73
4 2509072 2510004 + Bpe015083.2 Bpe04g00399 399
4 2521679 2524501 + Bpe015085.1 Bpe04g00401 401
14 4574321 4574911 + Bpe007171.1 Bpe14g00521 521
14 4575694 4576260 + Bpe007172.1 Bpe14g00522 522
8 22982332 22982823 - CaPI482276_08g016740.1 Cam08g1674 1674
1 11248046 11251213 + Carg25628-RA Car01g01224 1224
5 3088807 3091765 + Carg08273-RA Car05g00530 530
5 3092224 3092724 - Carg08274-RA Car05g00531 531
9 3161431 3166424 - Carg03040-RA Car09g00558 558
9 3169711 3174491 - Carg03041-RA Car09g00559 559
9 3176216 3177330 + Carg03042-RA Car09g00560 560
12 1527450 1532773 - Carg03833-RA Car12g00226 226
12 1536141 1538898 + Carg03834-RA Car12g00227 227
12 1539997 1540482 - Carg03835-RA Car12g00228 228
8 25628284 25628775 - CcPI632755_08g013700.1 Cco08g1370 1370
8 24463479 24463970 - CePI673135_08g012520.1 Cec08g1252 1252
3 15664740 15666454 + Chy3G062410.1 Chy03g01261 1261
4 1367647 1370097 + Chy4G068710.1 Chy04g00153 153
4 1375627 1376773 - Chy4G068730.1 Chy04g00155 155
4 1378666 1383452 + Chy4G068740.1 Chy04g00156 156
4 1390214 1396568 + Chy4G068750.1 Chy04g00157 157
4 1405648 1409006 - Chy4G068760.1 Chy04g00158 158
8 23755119 23755610 - ClG42_08g0137200.10 Clacu08g1372 1372
8 25041152 25041643 - ClCG08G012160.1 Cla08g01212 1212
1 10110306 10118039 + CmaCh01G014380.1 Cma01g01438 1438
1 10124986 10134118 + CmaCh01G014390.1 Cma01g01439 1439
1 11059657 11063571 + CmaCh01G016040.1 Cma01g01604 1604
5 2907244 2910306 + CmaCh05G005860.1 Cma05g00586 586
9 2529295 2533065 + CmaCh09G005560.1 Cma09g00556 556
9 2985380 2991163 - CmaCh09G006320.1 Cma09g00632 632
9 2992308 2994234 + CmaCh09G006330.1 Cma09g00633 633
12 1222070 1225867 - CmaCh12G002430.1 Cma12g00243 243
12 1228714 1231457 + CmaCh12G002440.1 Cma12g00244 244
12 1232132 1232617 - CmaCh12G002450.1 Cma12g00245 245
3 26086792 26088622 + MELO3C011130.2.1 Cme03g01757 1757
3 26123660 26128171 + MELO3C011127.2.1 Cme03g01761 1761
4 1333328 1337307 + MELO3C003464.2.1 Cme04g00178 178
4 1341476 1343113 - MELO3C003466.2.1 Cme04g00180 180
4 1344884 1350144 + MELO3C003467.2.1 Cme04g00181 181
4 1356820 1363990 + MELO3C003468.2.1 Cme04g00182 182
3 3365218 3366025 - PI0004699.1 Cmetu03g1677 1677
4 31099210 31102832 + PI0028991.1 Cmetu04g0081 81
4 32049355 32056719 - PI0022592.1 Cmetu04g0690 690
4 32063707 32069118 - PI0022739.2 Cmetu04g1273 1273
4 32071068 32072590 + PI0021921.1 Cmetu04g2325 2325
1 11526062 11529828 + CmoCh01G014880.1 Cmo01g01488 1488
1 11533557 11545496 + CmoCh01G014910.1 Cmo01g01491 1491
1 11551326 11554333 - CmoCh01G014940.1 Cmo01g01494 1494
5 3045969 3047142 - CmoCh05G006090.1 Cmo05g00609 609
5 3050845 3051575 - CmoCh05G006100.1 Cmo05g00610 610
5 3054196 3057229 + CmoCh05G006110.1 Cmo05g00611 611
5 3057570 3058070 - CmoCh05G006120.1 Cmo05g00612 612
9 3049038 3053247 + CmoCh09G006120.1 Cmo09g00612 612
9 3058447 3063497 - CmoCh09G006130.1 Cmo09g00613 613
9 3066632 3071610 - CmoCh09G006140.1 Cmo09g00614 614
9 3073403 3074534 + CmoCh09G006150.1 Cmo09g00615 615
12 1292596 1296626 - CmoCh12G001980.1 Cmo12g00198 198
12 1300108 1302910 + CmoCh12G001990.1 Cmo12g00199 199
7 10195304 10196098 + Conep07aG0148100.1 Cone7ag1439 1439
17 8359990 8363503 - Conep17aG0115800.1 Cone17ag1129 1129
17 8366354 8367273 + Conep17aG0116000.1 Cone17ag1131 1131
17 8371084 8374849 - Conep17aG0116100.1 Cone17ag1132 1132
17 8379872 8383389 - Conep17aG0116200.1 Cone17ag1133 1133
17 8389541 8391184 - Conep17aG0116400.1 Cone17ag1135 1135
20 1457470 1459376 + Conep20aG0034000.1 Cone20ag0326 326
20 3410290 3414134 + Conep20aG0060700.1 Cone20ag0590 590
20 3422865 3426234 + Conep20aG0060800.1 Cone20ag0591 591
2 2984020 2987027 + Cp4.1LG02g03660.1 Cpe02g00508 508
2 2996775 3001226 - Cp4.1LG02g03640.1 Cpe02g00509 509
2 3009917 3013952 - Cp4.1LG02g03620.1 Cpe02g00510 510
6 2895941 2898104 + Cp4.1LG06g03840.1 Cpe06g00489 489
6 2918408 2923191 - Cp4.1LG06g04970.1 Cpe06g00492 492
7 1328410 1329153 - Cp4.1LG07g02390.1 Cpe07g00206 206
7 1336192 1339047 + Cp4.1LG07g02430.1 Cpe07g00207 207
7 1339979 1340458 - Cp4.1LG07g02380.1 Cpe07g00208 208
11 2998527 2999974 - Cp4.1LG11g05190.1 Cpe11g00511 511
11 3002858 3003475 - Cp4.1LG11g05180.1 Cpe11g00512 512
11 3005868 3009073 + Cp4.1LG11g05120.1 Cpe11g00513 513
11 3009564 3012340 - Cp4.1LG11g05210.1 Cpe11g00514 514
8 24790768 24791259 - CrPI670011_08g011560.1 Cre08g1156 1156
2 20219711 20221965 - CsaV3_2G030750.1 Csa02g02256 2256
2 20225261 20226567 - CsaV3_2G030760.1 Csa02g02257 2257
2 20231321 20234319 + CsaV3_2G030770.1 Csa02g02258 2258
2 20234462 20235706 - CsaV3_2G030780.1 Csa02g02260 2260
3 39605940 39611248 + CsaV3_3G048500.1 Csa03g04544 4544
3 39619913 39627124 - CsaV3_3G048510.1 Csa03g04545 4545
3 39634012 39639474 - CsaV3_3G048520.1 Csa03g04546 4546
3 39639474 39641795 + CsaV3_3G048530.1 Csa03g04547 4547
3 39645934 39649360 - CsaV3_3G048550.1 Csa03g04549 4549
1 85895053 85898970 + Hsped.01g21260.1 Hepe01g2126 2126
1 86853700 86860638 - Hsped.01g22160.1 Hepe01g2216 2216
1 86874069 86877269 - Hsped.01g22170.1 Hepe01g2217 2217
1 86878927 86880283 + Hsped.01g22180.1 Hepe01g2218 2218
10 4117776 4118735 + Hsped.10g03740.1 Hepe10g0374 374
13 32656848 32657333 + Maker00034169 Lcy13g1423 1423
4 30462708 30470710 - Lsi04G023250.1 Lsi04g02325 2325
4 30485382 30488735 - Lsi04G023270.1 Lsi04g02327 2327
4 30490393 30492140 + Lsi04G023280.1 Lsi04g02328 2328
4 30498847 30503509 - Lsi04G023300.1 Lsi04g02330 2330
8 19264364 19267871 - Lsi08G010690.1 Lsi08g01069 1069
8 19327525 19329625 - Lsi08G010740.1 Lsi08g01074 1074
11 4336020 4340051 + MC11g0555 Mch11g0664 664
11 5156299 5163091 - MC11g0643 Mch11g0764 764
11 5169299 5173739 - MC11g0644 Mch11g0765 765
11 5175344 5177524 + MC11g0645 Mch11g0766 766
1 9345271 9345774 - Sed0010639.1 Sed01g1257 1257
2 46512908 46514310 + Sed0007960.1 Sed02g0905 905
5 28762384 28770261 + Sed0006198.2 Sed05g1507 1507
5 29810283 29814106 - Sed0026805.2 Sed05g1602 1602
12 11279105 11283349 - Sed0023433.1 Sed12g1393 1393
1 102701702 102705638 + Tan0020942.1 Tan01g3787 3787
1 104166355 104173148 - Tan0014720.2 Tan01g3928 3928
1 104181871 104186366 - Tan0001778.1 Tan01g3929 3929
1 104188423 104189631 + Tan0001628.1 Tan01g3930 3930
2 94063656 94064317 - Tan0002529.1 Tan02g2552 2552
4 2647939 2649519 - Vvi4g272 Vvi4g272 272
4 2657032 2657524 + Vvi4g273 Vvi4g273 273
4 2657660 2663256 - Vvi4g274 Vvi4g274 274
4 2669215 2670256 + Vvi4g275 Vvi4g275 275
4 2681348 2685591 + Vvi4g276 Vvi4g276 276
4 2700606 2710044 - Vvi4g277 Vvi4g277 277
4 2718500 2727390 - Vvi4g278 Vvi4g278 278
4 2730000 2731754 + Vvi4g279 Vvi4g279 279
4 2735886 2742173 - Vvi4g280 Vvi4g280 280
4 2742865 2747044 - Vvi4g281 Vvi4g281 281
       

DecoBrowse