Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1069 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi5g1070 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone18ag0897 . . . . . Blo02g00408 Blo07g00074 . Bda13g00296 . Bpe13g00749 Bma02g01001 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi5g1071 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi5g1072 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi5g1073 . . Bda03g01079 . Bpe04g00996 . Bma04g00993 . Cmo08g00093 . . . . . . . . . . . . . . . . . . . . . . . . Cone18ag0896 Cone11ag0608 . . . . . . . . . . . . . . . . . Car08g00074 . . Cpe17g00999 . . . . . . . . . . . . . . . . . .
Vvi5g1074 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag0623 . . . . . . Blo02g00409 . . Bda13g00295 . . . . . . . . . . . . . . . . . . . . Cla07g01481 Cam07g1578 Cec07g1677 Cco07g1638 Clacu07g1569 Cmu07g1537 Cre07g1913 . . . .
Vvi5g1075 . Blo12g00162 . . . . . . Cmo08g00846 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed09g0011 . . Cma08g00875 . . . . . Bhi12g02112 Tan06g1947 Cmetu06g2696 Lac12g1529 Hepe03g0625 . Lcy13g0847 . . . . . . . Lsi09g01610 . . Cme11g02209
Vvi5g1076 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi5g1077 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo02g00410 . . Bda13g00294 . . Bma02g01000 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi5g1078 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 592 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
3 10832670 10833758 + Bda017124.1 Bda03g01079 1079
13 3683222 3684918 + Bda001180.1 Bda13g00294 294
13 3686935 3688521 + Bda001181.1 Bda13g00295 295
13 3689299 3705271 + Bda001182.1 Bda13g00296 296
12 65792837 65794891 + XM_039020176.1 Bhi12g02112 2112
2 5317932 5329158 - BLOR10138 Blo02g00408 408
2 5330175 5331882 - BLOR10139 Blo02g00409 409
2 5366767 5371668 - BLOR10140 Blo02g00410 410
7 1097336 1107505 - BLOR18006 Blo07g00074 74
12 10710586 10712019 - BLOR04181 Blo12g00162 162
2 50637618 50638615 + Bma015813.1 Bma02g01000 1000
2 50680883 50775754 + Bma030920 Bma02g01001 1001
4 16115823 16116914 + Bma019598.1 Bma04g00993 993
4 6948095 6949132 - Bpe025673 Bpe04g00996 996
13 14022784 14031945 + Bpe010442.1 Bpe13g00749 749
7 30515864 30522727 + CaPI482276_07g015780.1 Cam07g1578 1578
8 441180 443102 + Carg04916-RA Car08g00074 74
7 30487079 30493935 + CcPI632755_07g016380.1 Cco07g1638 1638
7 32394809 32401705 + CePI673135_07g016770.1 Cec07g1677 1677
7 30370220 30376971 + ClG42_07g0156900.10 Clacu07g1569 1569
7 32099265 32106046 + ClCG07G015570.1 Cla07g01481 1481
8 5408839 5410323 - CmaCh08G008750.1 Cma08g00875 875
11 29338658 29340645 + MELO3C021163.2.1 Cme11g02209 2209
6 28300226 28301595 + PI0025224.1 Cmetu06g2696 2696
8 483250 485406 + CmoCh08G000930.1 Cmo08g00093 93
8 5457557 5459041 - CmoCh08G008460.1 Cmo08g00846 846
7 30625646 30629057 + CmPI595203_07g015370.1 Cmu07g1537 1537
11 3755204 3757685 + Conep11aG0062400.1 Cone11ag0608 608
15 3250281 3253252 - Conep15aG0063600.1 Cone15ag0623 623
18 6351668 6354362 - Conep18aG0092200.1 Cone18ag0896 896
18 6358146 6365498 - Conep18aG0092300.1 Cone18ag0897 897
17 7578402 7581477 + Cp4.1LG17g09940.1 Cpe17g00999 999
7 34623258 34630214 + CrPI670011_07g019130.1 Cre07g1913 1913
3 12621718 12623440 + Hsped.03g06250.1 Hepe03g0625 625
12 28534572 28536080 - Lag0015901.1 Lac12g1529 1529
13 14547031 14554650 + Maker00026230 Lcy13g0847 847
9 24291605 24293119 + Lsi09G016100.1 Lsi09g01610 1610
9 133344 144093 - Sed0012075.1 Sed09g0011 11
6 60253852 60255684 - Tan0010270.1 Tan06g1947 1947
5 19399773 19401611 + Vvi5g1069 Vvi5g1069 1069
5 19402090 19438833 - Vvi5g1070 Vvi5g1070 1070
5 19440332 19441268 + Vvi5g1071 Vvi5g1071 1071
5 19454351 19457007 + Vvi5g1072 Vvi5g1072 1072
5 19485540 19489381 + Vvi5g1073 Vvi5g1073 1073
5 19489539 19490647 - Vvi5g1074 Vvi5g1074 1074
5 19523279 19525079 + Vvi5g1075 Vvi5g1075 1075
5 19561952 19570171 - Vvi5g1076 Vvi5g1076 1076
5 19571587 19574196 - Vvi5g1077 Vvi5g1077 1077
5 19594657 19600379 - Vvi5g1078 Vvi5g1078 1078
       

DecoBrowse