Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g104 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g105 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g106 . . . . Bpe09g00261 . . Bma13g00928 Cmo16g00475 Cmo04g00614 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00732 . . . . . . . . . Cma04g00575 Cma16g00440 Car04g00544 . Cpe14g00370 Cpe01g00519 . . . . . . . . . . . . . . . Csa04g00806 Chy06g01174 .
Vvi19g107 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g108 . . . . . Bpe08g00983 . . . . . Cma09g00823 . Car09g00741 . . . Bhi09g03516 . . . . . . Cla11g01708 Cam11g1776 Cec11g1797 Cco11g1802 Clacu11g1935 Cmu11g1746 Cre11g2154 Cone6ag0196 . . . Lsi04g02010 Csa04g02283 Chy07g00020 Cme07g00534 . . . . . . Bma07g01166 . . . Cmo09g00818 . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g109 . . . . . Bpe08g00982 . . . . . Cma09g00822 . Car09g00740 Sed04g2434 . . Bhi09g03513 Tan01g4317 Cmetu07g1764 . Hepe01g1442 Mch11g1008 . Cla11g01709 Cam11g1777 Cec11g1798 Cco11g1803 Clacu11g1936 Cmu11g1747 Cre11g2155 Cone6ag0195 Cone9ag0226 . . Lsi04g02011 Csa04g02284 Chy07g00022 Cme07g00535 . . . . . . Bma07g01141 . . . Cmo09g00817 . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g110 . . . . . Bpe08g00981 . . . . . Cma09g00821 . Car09g00738 Sed04g2435 . . Bhi09g03512 Tan01g4318 Cmetu07g0546 . Hepe01g1441 Mch11g1010 . Cla11g01710 Cam11g1778 Cec11g1799 Cco11g1804 Clacu11g1937 Cmu11g1748 Cre11g2156 . Cone9ag0225 . . Lsi04g02012 Csa04g02286 Chy07g00023 Cme07g00536 . . . . . . Bma07g01140 . . . Cmo09g00816 . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g111 . . . . . Bpe08g00980 . . . . Cma01g01248 Cma09g00820 Car01g01070 Car09g00737 Sed04g2436 . Cpe02g00668 Bhi09g03511 Tan01g4320 Cmetu07g0744 . Hepe01g1440 . . Cla11g01711 Cam11g1779 Cec11g1800 Cco11g1805 Clacu11g1938 Cmu11g1749 Cre11g2157 . . . . Lsi04g02013 . . Cme07g00537 . . . . . . Bma07g01139 . . Cmo01g01304 Cmo09g00815 . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g112 . . . . Bpe09g00260 Bpe08g00979 . Bma13g00929 Cmo16g00476 . Cma01g01247 Cma09g00819 Car01g01069 Car09g00736 Sed04g2437 . Cpe02g00669 Bhi09g03509 Tan01g4322 Cmetu07g0523 . Hepe01g1439 Mch11g1011 . Cla11g01712 Cam11g1780 Cec11g1801 Cco11g1806 Clacu11g1939 Cmu11g1750 Cre11g2158 . . . . Lsi04g02014 Csa04g02287 Chy07g00024 Cme07g00538 Blo07g00966 Blo10g00733 . . . . Bma07g01138 . . Cmo01g01303 Cmo09g00814 . Cma16g00441 . . Cpe14g00371 . . . . . . . . . . . . . . . . Csa04g00805 . .
Vvi19g113 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 2256 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
9 88506135 88508294 - XM_039043876.1 Bhi09g03509 3509
9 88526584 88531881 - XM_039042773.1 Bhi09g03511 3511
9 88543442 88547691 + XM_039042824.1 Bhi09g03512 3512
9 88546767 88551571 - XM_039042825.1 Bhi09g03513 3513
9 88579073 88582026 + XM_039043389.1 Bhi09g03516 3516
7 29050483 29052333 - BLOR18898 Blo07g00966 966
10 22992816 22995804 - BLOR02522 Blo10g00732 732
10 23020416 23031067 + BLOR02523 Blo10g00733 733
7 45510781 45512616 - Bma026365.1 Bma07g01138 1138
7 45514647 45519373 - Bma026366.2 Bma07g01139 1139
7 45529335 45531038 + Bma026367.1 Bma07g01140 1140
7 45531333 45535178 - Bma026368.1 Bma07g01141 1141
7 46172858 46175506 - Bma026403.1 Bma07g01166 1166
13 39771682 39774628 - Bma010006.1 Bma13g00928 928
13 39776073 39779089 + Bma010007.1 Bma13g00929 929
8 12202178 12204004 - Bpe023103.1 Bpe08g00979 979
8 12205882 12210247 - Bpe023104.2 Bpe08g00980 980
8 12211120 12212817 + Bpe023105.1 Bpe08g00981 981
8 12213108 12217035 - Bpe023106.1 Bpe08g00982 982
8 12222681 12224294 + Bpe023107.1 Bpe08g00983 983
9 1899999 1903148 - Bpe023931.1 Bpe09g00260 260
9 1905374 1908302 + Bpe023932.1 Bpe09g00261 261
11 30269963 30272245 - CaPI482276_11g017760.1 Cam11g1776 1776
11 30272914 30277085 + CaPI482276_11g017770.1 Cam11g1777 1777
11 30279402 30281189 - CaPI482276_11g017780.1 Cam11g1778 1778
11 30282786 30286890 + CaPI482276_11g017790.1 Cam11g1779 1779
11 30289123 30290994 + CaPI482276_11g017800.1 Cam11g1780 1780
1 10026241 10028067 - Carg14733-RA Car01g01069 1069
1 10028679 10032719 - Carg14734-RA Car01g01070 1070
4 3059573 3063962 + Carg13163-RA Car04g00544 544
9 4375785 4377647 - Carg17056-RA Car09g00736 736
9 4378510 4382979 - Carg17057-RA Car09g00737 737
9 4383068 4384855 + Carg17058-RA Car09g00738 738
9 4385031 4388524 - Carg17061-RA Car09g00740 740
9 4388731 4390391 + Carg17062-RA Car09g00741 741
11 30681675 30683966 - CcPI632755_11g018020.1 Cco11g1802 1802
11 30684656 30688824 + CcPI632755_11g018030.1 Cco11g1803 1803
11 30691086 30692873 - CcPI632755_11g018040.1 Cco11g1804 1804
11 30694559 30698656 + CcPI632755_11g018050.1 Cco11g1805 1805
11 30701010 30702878 + CcPI632755_11g018060.1 Cco11g1806 1806
11 32136511 32138349 - CePI673135_11g017970.1 Cec11g1797 1797
11 32138921 32143087 + CePI673135_11g017980.1 Cec11g1798 1798
11 32145409 32147196 - CePI673135_11g017990.1 Cec11g1799 1799
11 32148864 32152957 + CePI673135_11g018000.1 Cec11g1800 1800
11 32155327 32157198 + CePI673135_11g018010.1 Cec11g1801 1801
6 10423073 10426926 + Chy6G117020.1 Chy06g01174 1174
7 198409 201761 - Chy7G128500.1 Chy07g00020 20
7 202309 206101 + Chy7G128520.1 Chy07g00022 22
7 207046 208818 - Chy7G128530.1 Chy07g00023 23
7 209391 216347 + Chy7G128540.1 Chy07g00024 24
11 30306973 30309251 - ClG42_11g0193500.10 Clacu11g1935 1935
11 30309913 30314084 + ClG42_11g0193600.10 Clacu11g1936 1936
11 30316422 30318209 - ClG42_11g0193700.10 Clacu11g1937 1937
11 30319843 30323949 + ClG42_11g0193800.10 Clacu11g1938 1938
11 30326310 30328181 + ClG42_11g0193900.10 Clacu11g1939 1939
11 30653003 30655666 - ClCG11G017430.2 Cla11g01708 1708
11 30656135 30660478 + ClCG11G017440.1 Cla11g01709 1709
11 30662628 30664415 - ClCG11G017450.1 Cla11g01710 1710
11 30666453 30670773 + ClCG11G017460.1 Cla11g01711 1711
11 30673071 30674942 + ClCG11G017470.1 Cla11g01712 1712
1 8989078 8990904 - CmaCh01G012470.1 Cma01g01247 1247
1 8991337 8995828 - CmaCh01G012480.1 Cma01g01248 1248
4 2925521 2930122 + CmaCh04G005750.1 Cma04g00575 575
9 4030422 4032301 - CmaCh09G008190.1 Cma09g00819 819
9 4032769 4036970 - CmaCh09G008200.1 Cma09g00820 820
9 4037027 4038829 + CmaCh09G008210.1 Cma09g00821 821
9 4038802 4042305 - CmaCh09G008220.1 Cma09g00822 822
9 4042413 4044350 + CmaCh09G008230.1 Cma09g00823 823
16 2194491 2198694 - CmaCh16G004400.1 Cma16g00440 440
16 2199104 2202801 + CmaCh16G004410.1 Cma16g00441 441
7 4447145 4449577 - MELO3C025643.2.1 Cme07g00534 534
7 4451990 4457243 + MELO3C025641.2.1 Cme07g00535 535
7 4459358 4461136 - MELO3C025640.2.1 Cme07g00536 536
7 4461364 4465965 + MELO3C025639.2.1 Cme07g00537 537
7 4466832 4468908 + MELO3C025638.2.1 Cme07g00538 538
7 21547409 21549562 + PI0004754.1 Cmetu07g0523 523
7 21539088 21541203 - PI0025745.1 Cmetu07g0546 546
7 21541913 21546177 + PI0017777.1 Cmetu07g0744 744
7 21534275 21538303 + PI0005425.1 Cmetu07g1764 1764
1 10352005 10353828 - CmoCh01G013030.1 Cmo01g01303 1303
1 10354344 10358691 - CmoCh01G013040.1 Cmo01g01304 1304
4 3057913 3063135 + CmoCh04G006140.1 Cmo04g00614 614
9 4189950 4191824 - CmoCh09G008140.1 Cmo09g00814 814
9 4192479 4196160 - CmoCh09G008150.1 Cmo09g00815 815
9 4196305 4198092 + CmoCh09G008160.1 Cmo09g00816 816
9 4198266 4201831 - CmoCh09G008170.1 Cmo09g00817 817
9 4201164 4205598 + CmoCh09G008180.1 Cmo09g00818 818
16 2271385 2275619 - CmoCh16G004750.1 Cmo16g00475 475
16 2275976 2279670 + CmoCh16G004760.1 Cmo16g00476 476
11 29560152 29562430 - CmPI595203_11g017460.1 Cmu11g1746 1746
11 29563092 29567263 + CmPI595203_11g017470.1 Cmu11g1747 1747
11 29569598 29571385 - CmPI595203_11g017480.1 Cmu11g1748 1748
11 29572977 29577080 + CmPI595203_11g017490.1 Cmu11g1749 1749
11 29579440 29581311 + CmPI595203_11g017500.1 Cmu11g1750 1750
6 931736 933746 - Conep06aG0019700.1 Cone6ag0195 195
6 933938 935678 + Conep06aG0019800.1 Cone6ag0196 196
9 951804 953681 + Conep09aG0022800.1 Cone9ag0225 225
9 951835 956192 - Conep09aG0022900.1 Cone9ag0226 226
1 2985673 2990297 + Cp4.1LG01g01560.1 Cpe01g00519 519
2 4197623 4201966 + Cp4.1LG02g02140.1 Cpe02g00668 668
2 4202195 4204021 + Cp4.1LG02g02150.1 Cpe02g00669 669
14 2264319 2268568 - Cp4.1LG14g03520.1 Cpe14g00370 370
14 2269164 2272698 + Cp4.1LG14g03410.1 Cpe14g00371 371
11 33213460 33215742 - CrPI670011_11g021540.1 Cre11g2154 2154
11 33216436 33220618 + CrPI670011_11g021550.1 Cre11g2155 2155
11 33222954 33224741 - CrPI670011_11g021560.1 Cre11g2156 2156
11 33226431 33230532 + CrPI670011_11g021570.1 Cre11g2157 2157
11 33232848 33234719 + CrPI670011_11g021580.1 Cre11g2158 2158
4 5642033 5646343 - CsaV3_4G008050.1 Csa04g00805 805
4 5646770 5651059 + CsaV3_4G008060.1 Csa04g00806 806
4 23409111 23411610 - CsaV3_4G033090.1 Csa04g02283 2283
4 23417381 23422142 + CsaV3_4G033100.1 Csa04g02284 2284
4 23423187 23424956 - CsaV3_4G033120.1 Csa04g02286 2286
4 23431013 23433256 + CsaV3_4G033130.1 Csa04g02287 2287
1 79632150 79634441 - Hsped.01g14390.1 Hepe01g1439 1439
1 79650851 79655862 - Hsped.01g14400.1 Hepe01g1440 1440
1 79658049 79660059 + Hsped.01g14410.1 Hepe01g1441 1441
1 79661775 79666770 - Hsped.01g14420.1 Hepe01g1442 1442
4 27198560 27201362 - Lsi04G020100.1 Lsi04g02010 2010
4 27202963 27207148 + Lsi04G020110.1 Lsi04g02011 2011
4 27208594 27210396 - Lsi04G020120.1 Lsi04g02012 2012
4 27211687 27216515 + Lsi04G020130.1 Lsi04g02013 2013
4 27218402 27220273 + Lsi04G020140.1 Lsi04g02014 2014
11 6993218 6997680 + MC11g0825 Mch11g1008 1008
11 6998393 7000153 - MC11g0827 Mch11g1010 1010
11 7007275 7009131 + MC11g0828 Mch11g1011 1011
4 37581713 37586575 + Sed0006465.1 Sed04g2434 2434
4 37586841 37588775 - Sed0001562.1 Sed04g2435 2435
4 37590354 37594968 + Sed0007644.1 Sed04g2436 2436
4 37596188 37598580 + Sed0022037.1 Sed04g2437 2437
1 108037952 108042752 + Tan0021652.2 Tan01g4317 4317
1 108047839 108049710 - Tan0015242.1 Tan01g4318 4318
1 108052093 108056621 + Tan0004900.2 Tan01g4320 4320
1 108063090 108066359 + Tan0017196.1 Tan01g4322 4322
19 1346881 1349339 - Vvi19g104 Vvi19g104 104
19 1351601 1354537 - Vvi19g105 Vvi19g105 105
19 1360588 1367394 + Vvi19g106 Vvi19g106 106
19 1367749 1370643 - Vvi19g107 Vvi19g107 107
19 1375240 1379055 - Vvi19g108 Vvi19g108 108
19 1383807 1390453 + Vvi19g109 Vvi19g109 109
19 1391460 1393290 - Vvi19g110 Vvi19g110 110
19 1394613 1399067 + Vvi19g111 Vvi19g111 111
19 1401148 1420720 + Vvi19g112 Vvi19g112 112
19 1420719 1420884 + Vvi19g113 Vvi19g113 113
       

DecoBrowse