Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g96 Blo02g00659 . . . . . . . . . Cma02g00332 Cma20g00772 Car02g00213 Car20g00675 . . . . . . . . . . . . . . . . . Cone12ag1208 Cone8ag1260 . . Lsi10g00460 . Chy11g00300 . . . . . . . . . . Cmo02g00329 . . . . . Cpe16g00293 Cpe05g01308 Bhi10g01898 Tan05g1198 . . Hepe08g0950 . . Cla02g01118 Cam02g1192 . . Clacu02g1181 Cmu02g1141 . . Csa02g01349 . Cme11g00422
Vvi3g97 . . Bda06g00969 . . . . Bma12g00525 . Cmo11g01723 . . . . . Cpe04g00574 . Bhi05g01747 . . . . . . Cla02g00449 Cam02g0456 Cec02g0455 Cco02g0474 Clacu02g0457 Cmu02g0452 Cre02g0786 Cone12ag1209 Cone8ag1261 . . . Csa07g00078 . Cme01g01286 . . . . . . . . . . . Cma11g01397 . . . . . . . . . . . . . . . . . . . Lsi11g01179 . Chy01g00699 .
Vvi3g98 . . . . . . Bma05g00411 . . . . . Car02g00212 . . . . . . . . . . . . . . . . . . . . . . Lsi10g00461 . Chy11g00299 . . . . . . Bpe05g00307 . . . . . . . . . . Cpe05g01309 Bhi10g01894 . . . Hepe08g0949 . . Cla02g01117 Cam02g1190 . Cco02g1246 Clacu02g1180 Cmu02g1140 Cre02g1456 . Csa02g01350 . Cme11g00421
Vvi3g99 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g100 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g101 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g102 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g103 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g104 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g105 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 248 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
6 28999594 29001858 - Bda033708 Bda06g00969 969
5 56088779 56093030 + XM_039032944.1 Bhi05g01747 1747
10 47552294 47562793 - XM_039046727.1 Bhi10g01894 1894
10 47663619 47667086 + XM_039046742.1 Bhi10g01898 1898
2 16968637 16970834 - BLOR10389 Blo02g00659 659
5 12946727 12956247 + Bma021246.1 Bma05g00411 411
12 19099719 19101966 - Bma007631.1 Bma12g00525 525
5 16544994 16553886 + Bpe017720.1 Bpe05g00307 307
2 5256804 5266272 + CaPI482276_02g004560.1 Cam02g0456 456
2 23622930 23631798 - CaPI482276_02g011900.1 Cam02g1190 1190
2 23636669 23639373 + CaPI482276_02g011920.1 Cam02g1192 1192
2 1291828 1301359 + Carg19802-RA Car02g00212 212
2 1301928 1304971 + Carg19803-RA Car02g00213 213
20 3800034 3802846 + Carg16196-RA Car20g00675 675
2 4279807 4289697 + CcPI632755_02g004740.1 Cco02g0474 474
2 23683311 23691668 + CcPI632755_02g012460.1 Cco02g1246 1246
2 4280704 4290581 + CePI673135_02g004550.1 Cec02g0455 455
1 5113736 5122842 + Chy1G006990.1 Chy01g00699 699
11 2735648 2744566 - Chy11G188790.1 Chy11g00299 299
11 2747457 2750066 + Chy11G188800.1 Chy11g00300 300
2 4138338 4149197 + ClG42_02g0045700.10 Clacu02g0457 457
2 23693286 23702150 - ClG42_02g0118000.10 Clacu02g1180 1180
2 23707077 23709765 + ClG42_02g0118100.10 Clacu02g1181 1181
2 4396275 4408250 + ClCG02G004340.2 Cla02g00449 449
2 23932320 23941561 - ClCG02G011430.1 Cla02g01117 1117
2 23946389 23949077 + ClCG02G011440.2 Cla02g01118 1118
2 1632227 1645441 + CmaCh02G003320.1 Cma02g00332 332
11 9196779 9201841 + CmaCh11G013970.1 Cma11g01397 1397
20 3654366 3657128 + CmaCh20G007720.1 Cma20g00772 772
1 16213050 16216866 + MELO3C013379.2.1 Cme01g01286 1286
11 4229735 4239229 - MELO3C020778.2.1 Cme11g00421 421
11 4245839 4248855 + MELO3C020775.2.1 Cme11g00422 422
2 1688478 1701634 + CmoCh02G003290.1 Cmo02g00329 329
11 12196584 12202711 - CmoCh11G017230.1 Cmo11g01723 1723
2 4134377 4145196 + CmPI595203_02g004520.1 Cmu02g0452 452
2 23557716 23566579 - CmPI595203_02g011400.1 Cmu02g1140 1140
2 23571501 23574189 + CmPI595203_02g011410.1 Cmu02g1141 1141
8 10473999 10476574 - Conep08aG0129800.1 Cone8ag1260 1260
8 10477023 10479543 - Conep08aG0129900.1 Cone8ag1261 1261
12 9446337 9448886 - Conep12aG0124800.1 Cone12ag1208 1208
12 9449436 9452463 - Conep12aG0124900.1 Cone12ag1209 1209
4 6167609 6172160 - Cp4.1LG04g05130.1 Cpe04g00574 574
5 9174757 9177705 - Cp4.1LG05g13150.1 Cpe05g01308 1308
5 9178795 9188137 - Cp4.1LG05g13140.1 Cpe05g01309 1309
16 4912798 4915603 - Cp4.1LG16g02870.1 Cpe16g00293 293
2 4707380 4718273 + CrPI670011_02g007860.1 Cre02g0786 786
2 26379941 26388828 + CrPI670011_02g014560.1 Cre02g1456 1456
2 12989679 12994006 - CsaV3_2G015650.1 Csa02g01349 1349
2 12995198 13005634 + CsaV3_2G015660.1 Csa02g01350 1350
7 759560 763260 - CsaV3_7G000780.1 Csa07g00078 78
8 8767752 8776935 - Hsped.08g09490.1 Hepe08g0949 949
8 8780872 8784738 + Hsped.08g09500.1 Hepe08g0950 950
10 6678192 6681529 - Lsi10G004600.1 Lsi10g00460 460
10 6683880 6695467 + Lsi10G004610.1 Lsi10g00461 461
11 20272599 20277224 - Lsi11G011790.1 Lsi11g01179 1179
5 11853472 11859852 + Tan0008128.3 Tan05g1198 1198
3 1009626 1014673 - Vvi3g96 Vvi3g96 96
3 1015313 1019861 - Vvi3g97 Vvi3g97 97
3 1025536 1040108 + Vvi3g98 Vvi3g98 98
3 1043473 1048736 - Vvi3g99 Vvi3g99 99
3 1049126 1061006 - Vvi3g100 Vvi3g100 100
3 1061639 1065537 - Vvi3g101 Vvi3g101 101
3 1066257 1081084 - Vvi3g102 Vvi3g102 102
3 1082215 1096163 - Vvi3g103 Vvi3g103 103
3 1111136 1113257 - Vvi3g104 Vvi3g104 104
3 1168818 1189934 - Vvi3g105 Vvi3g105 105
       

DecoBrowse